RNA id: XM_026943101.2


Basic Information

Item Value
RNA id XM_026943101.2
length 4169
RNA type mRNA
GC content 0.43
exon number 27
gene id slc12a10.1
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8609467 ~ 8623393 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGAGAACtagtcaaaaaagaaaaaataaccaTGAAAACGAAGAACtaattagaaacattttaaatagacAAAAAGCTATACAGAACAGATCAAAAGCATACTCTACTGAACCTCATTCATACTAAGCGTACAGTTTATTACACACATCAATGGGGCACTTTGTCTCCAAACGCAAACAGATGGATCTAAACGGCTTGCCTCCACATCCCTTTTCTTTTACTGAAGAGGTGCCACGACAATACCCGAGGCAGGAAGAGGATACTGCTGGAGCAATTCAGGCTAGTGGAACTAGTAGTGAAATTAGCATCAGCATGGAATGGGAAACCCCCAGACAGGCATCTGAACACCAGACTTCAAGGCAGGACTGCCAACGACCGTCCATTTACAGCACCGTGGACGCAGTGCCTCATCTTGAGTTTTACACCAACTCCATAGGTCGGCAACAACGTAGCAGACCATCACTGGAGATTCTCCGCAAGGTTTCCGAAgattATGAAGCAAGTAGTAATATGGGAGACTTAAGAAGAGAAAGCCACTCTGTGATCCAAGAGCAGGAAGAGAAGCAGCAGAACAGTACTAAAGGGAAGACCACCCAACCAGTCCGCTTTGGCTGGGTCACAGGTGTCATGATTCGATGTATGCTGAATATCTGGGGAGTAATTCTGTTCCTGAGAGTGCCTTGGATTACAGCTCAGGCAGGAATCCTTGCCACTTGGGTTATCATCTTCATGTCTGTACTGGTAACCTCAGTCACTTCATTATCAGTGTCGGCTATTTCCACCAATGGGAGAGTCTCCTCTGGTGGTGCCTACTTTATGATTTCACGCACCTTGGGCCCTGAATTGGGGGGTCCCATTGGTATGGTGTTCTCTTTCGCCAATGCTCTTGGCTGTGCACTCAACACTGTGGGATTTGCAGAGACTGTCCGAGATCTTCTCAttAAATATAATGCTGTCATTGTGGATGAGATCAATGATGTGCGTATAATAGGTGCAATCACAGTCACTTGTCTTTTGCTGATCTCCTTGGCTGGAATGGAATGGGAGTCAAAGACTCAGATTATATTCTTCCTTGTGTTGATTGTGACCTTCATTAACTATTTTGTGGGCACTGTGATACCAGCCACTCCAGAGAAGCAGTCAATGGGCTTCTTCAGCTACAGATATGAGATCTTTGTGGACAACTTACTTCCTAAGTGGAGAGAGCCACAGGGAGATTTCTTCCAGATGTTCGCCATCTTTTTCCCTTCTGCAATTGGCATTTTGGCAGGTGCCAATATCTCTGGAGATCTGAAGgatcCTGAGACTGCTATTCCCAAAGGAACACTAATGGCCATCTTTTGGACAACCATGAGCTATTTAGCAATAACTGTAACTGTAGGGGCATGTGTGGTGCGTGATGCCTCTGGAAACCTGAATGACAGTTTGCCAGTGAATTTCTCCGAGCCTTGTGAGGGTTTAGGATGCAAGCTGGGTTGGAACTTTACAATGTGCGAGCAGAGTCAGTCCTGCTCCTTTGGCCTGGCCAACAACTTTCAGGTGCTCAGTATGGTGTCAGCTTTTGGCCCTCTCATCACTGCTGGCATTTTTGCAGCCAGTTTATCATCAGCTCTTGCCTTCCTGGTCTCTGCTCCTAAAGTCTTCCAAtgtctCTGCAGGGACAACATATACCCATACATAGGCATCTTTGCAAAGGGTTATGGGAAAAATAATGAGCCACTGCGTGCATACATTCTGACCTACTTCATTGCTTTGgccttcattctgattgCCGAGTTGAACGTCATCGCTCCTCTCATCTCTAATTTCTTTCTGTGCTCCTACGCTCTCATCAACTTCAGCTGCTTCCACGCCTCCATCACCAACTCACCAGGGTGGAGGCCATCTTTCAAATACTACAGTCGCTGGACGGCTCTGTTTGGAGCCGTTATCTCTGTGGTGCTGATGTTCCTGCTCACCTGGTGGGCTGCTCTTATCACCTTCGGCATCATCTTCTTTTTATTAGGTTATGTTATGTACAAGAAACCAAAGGTTAATTGGGGCTCGTCTGTCCAGGCTGGTACCTACAACATGGCTCTGTCCTATTCAGTCTCTCTTGCTACTGTAGAAGACCATGTCAAGAATTTTAgACCTCAGTGTTTGGTTTTGACTGGTCCTCCAAACTTGCGTCCAGCTCTAGTGGACTTTGTGGGCTCTTTCACAAAGAATGTCAGTCTGATGATCTGTGGAAACATTATCATGGATGAGAATAAGTCTGTCACGTCCCAAGCCAGTACAGACAGATTAGTAAAATGGCTGAACAATAGGAAGGTCCGCTCCTTCTACACACCGTTTAAGGGAAACAGTTTGAGAGAAGGAACTCGGCATCTCATGCAAGCTTCTGGTTTGGGAAAACTCAAGCCTAATACACTGGTCATGGGGTTCAAGACTAACTGGAAGGAGTGCAGTCCTTATAACTTGGAGGATTACGTTAACACTATATATGATACATTTGATTCTAACTATGGAGTGTGTATTCTCAGAATGATGGATGGACTTGACATTGCAGAAGAGTTAGAGTGTGCAGCAAACCATGCCTTTGAGGCCAACGAGACCATTGAATCAGATCAGAGTCAGAATTCAGAAACAGAATCAGATGATGAAAAATCAAACCACATTATTGACAACGAGATCAGAACGGTTTTTCAGAACAAACAGGGACGGAAAACCATAGACGTGTACTGGATCTCTGATGATGGAGGTCTGACTCTGTTGGTGCCATATCTGTTAACTAGAAGGAAGCGCTGGAGGAGAAGTAAAGTTCGGGTTTTTGTCATAGGGGAGCTGCAGACCATGGAGCATGAGCGCAAAGAGATGATGAATTTATTACGAAGATTTCGTTTGGATGTCCATGATGTCATTGTAATGACAGACACTGAAAGGTTGCCTTCCTCCAAAAActtgAAGCGATTTGAGGACTCTGTTGCCTTGTTCATGTTCAGAGAGGAGCAGCAGAGAGAGGATTCGGAGCAGCAGCAAAAGACATCCTGTCCATGGAAAGTTTCAGATAAACAGATGGATGCATTCAGGCTGAAGtCAGAGAGAAAGGTGAGATTGAATGAGATCATTAGGAGGAATTCCAAACATGCTGCTCTGATCTTGGTTTCGTTACCTGTCCCTCAAAGCGACTGTCCCAGTTCTCTCTATATGGCCTGGCTGGACACTCTGAGCTTTGGACTTCACTGTCCCGTCCTGTTTATACGAGGGAATCAGAAAAACGTACTCACATTCTACTGCcagtaacacactaacaaacaactAATGATGGTGGATCAAATTATGCAGTTGAGACTTGACCAAATCTTCCATCAGAGCTTTTAGTGCTTTTCCCCCAAAGTCTACTTTCATACAAACACACCTTGAGTATGTTTCCAAAGAAAGCTTTTAGCCACTGATGGTTTAACTCTATGTGCATTAAAGATATCATGAAAGTGGACAGCTGTTTTGGGAAAACTACTAAAAGCTTAGATGGAGAATTTCCTCACTTCTCTAGTCGTTATTCAATTATGAGAGTTATTTGTGGCTATGCAGCTAATGTTAGTTCCAATCTAATGCACTTATGCACTCATCCAGataatcaatttattttaccttcactaattaatataacaataaaaaacaaaaatacttaaACATCATCAATTTATGAAGGACCTATAAAAATGAGACTTTTGTCAACTTCACCTCATAAGCTTTGTtgtactaaatattaaaaatgtttaaatatagaaatgttacttcaattttttttttattcagaaactTGAGCATATAAGCAATTGTATAAGAATGGTATCTTAATTTAATTATGTCGTGAAGATTCAAGTGCAGAAATAATTTGTATTTACTAGCAACATTCCATGCTACATTTgagtaaattacatttttatctgtGAAGCTTGGACCACTTGGGCTTGGCATTGAACTCACCTTTAACAAGCTGAGGATTCTCCACAAACGGGtattattaatgctgaagttggAAACTAATGATCTCTTGAATGTATATATTTGGTTTGCagcataaaaagaaatatttgatTCGATGACTCTATCAAACCCAAAGACTACATCCTTCAGCTATGTTGTCATGGTGCACCACGGGCAAAGCACTGAGTGGAACAGTCTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015377 cation molecular_function

KEGG:

id description
K10951 SLC12A2, NKCC1; solute carrier family 12 (sodium/potassium/chloride transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467505 lncRNA upstream 142865 8466269 ~ 8466602 (+) True G394306
TU467489 lncRNA upstream 169030 8420682 ~ 8440437 (+) True G394291
TU467449 lncRNA upstream 324128 8285006 ~ 8285339 (+) True G394262
TU467447 lncRNA upstream 329263 8279534 ~ 8280204 (+) True G394260
TU467413 lncRNA upstream 374307 8234679 ~ 8235160 (+) True G394229
TU467590 lncRNA downstream 37303 8660696 ~ 8661230 (+) True G394373
TU467767 lncRNA downstream 229151 8852544 ~ 8852767 (+) True G394520
TU467774 lncRNA downstream 289487 8912880 ~ 8913084 (+) True G394527
TU467802 lncRNA downstream 384481 9007874 ~ 9008080 (+) True G394555
TU468001 lncRNA downstream 842135 9465528 ~ 9465728 (+) True G394747
XM_034301390.1 mRNA upstream 26377 8496076 ~ 8583090 (+) False LOC113544387
XM_034301389.1 mRNA upstream 26377 8521076 ~ 8583090 (+) True LOC113544387
XM_026942941.2 mRNA upstream 122932 8474884 ~ 8486535 (+) True LOC113544248
XM_026943189.2 mRNA upstream 172271 8414473 ~ 8437196 (+) True slc30a6
XM_026943208.2 mRNA upstream 198926 8400794 ~ 8410541 (+) True LOC113544399
XM_026943122.2 mRNA downstream 38851 8662244 ~ 8685925 (+) True nvl
XM_026943056.2 mRNA downstream 122424 8745817 ~ 8758376 (+) False phf3
XM_026943055.2 mRNA downstream 122424 8745817 ~ 8758376 (+) False phf3
XM_034301143.1 mRNA downstream 122424 8745817 ~ 8758376 (+) False phf3
XM_026943057.2 mRNA downstream 122631 8746024 ~ 8758376 (+) False phf3
TU467438 other upstream 350165 8258928 ~ 8259302 (+) True G394251
TU466595 other upstream 1178557 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1708527 6896993 ~ 6900940 (+) False LOC117596330
XR_003404502.2 other upstream 1990785 6615959 ~ 6618682 (+) False LOC113544406
trnal-cag_18 other downstream 72804 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 512564 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1477619 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1575930 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other downstream 1575930 10199323 ~ 10224804 (+) False LOC113544300

Expression Profile