RNA id: XM_034301240.1


Basic Information

Item Value
RNA id XM_034301240.1
length 3685
RNA type mRNA
GC content 0.47
exon number 18
gene id sh3d19
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6009263 ~ 6026147 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacgctcacactcacacacacacacacacacatctctggtTTTCGGATACACATCAGGATGGCGTGACAGCCAAAACGACCTGCAGAGAGATAAAGCAGATCGTTCACACTCAAGGCATCCAGAGAGAACCACTGAATTCATAGAACCGCTGTCGGCCACTTCCTGGTTAGAACGGAGATTTCCGGCTCATCCAGCTTCTGCACTGACACTCTGGGATGGAGGAGTTAACCCATCAGAGCCGGTAGTGTGAaaCTGCCGCCATCTTCTGACCAGGTGATCGAAGAAAATACCCAGGAAAAGATCACAACCTCTACGGCCTCTTCTCaactatcacacaacagctccGTTGCTACACAAactgaggaagaaaaaacacacacgtcAGAACGTAGCAAATCTGGAGAGTTGCCACAGAGGACGTCACTATCTCACGAAATCACAGTTAGATCCACAGATCAACACCAAGCAGCCAATCACGATCCACCTCAGCTAAGTAGTGACCAATCATCATCAGTCCTGGTCTCTTCATCAGTGCTCAGATtctttctgtccaatcagagacTTCTGCGCTGTTTCCAAGACCCCGCCCTGTGCCCCGTCCTCACTCTCAGTCCAAACAGAGAATCACCAacgaggtcaaaggtcaaacgCGTGTTACTCTGCTGGAAGACGATGCTAGTGACCTTGTGACCTTGAAAGAAAATGACCCACCTGCATCATCAGGGAAATTAACAGAACTGTTGGAGGTTTTTACTACTTTTGACTTAGAACGAAGAGGACCTGATTGAGAACATGGCTGCCCTTCACAGTGAGCGCAACATCCGCTCTAAGATCCAGGAATTTGAGAAACAGATTAGCACTGATGAGATCAGCATCCCGACGCCACGACCCCGAAACACGACACGGCCAGCCTTGGCGCCGAAACCCTCCATGACCCAGCGAGCCTTCATCAGCAGCAccacagaagaagaaacaaacacacagacctgGCCAGATAATAACTATGAGGAGGTTATTAGAACAAACAGCACTCCAGTGCCTCCATCTCCAGCCCAGAGACCACAGATACCTAGAAAACTCTCACTGAACTCTAGCGATCAGTTTAAAGCCCAACCTCTGATTAAACCTCCTCCTCAGCTCCCGTCTCGACCCTCGCTGCGCGGAGAGGTAGAACTCTAAACTCCCAGAACGAGGATGCTGTTTTCAACACTTCTCCGTTTTCTCCACGCCACGGTACATTCAGTCATCAATCACTGCAGCACCAAGGAGAACGAATACGTGGATGCTCCTGTTAGTCACGTTCCCTCTAACCTGGCCCAGGCTGCCACTTTCACCGACGCAGTGAGTCGGAAACCGACCATCATCCGAGTTCCCAGCAGACAGGAACAGGAAGTGTCTGATTGTTTCCCTCCTGCATTTCCTGTTCAGAGATCTATAGGAGGCCTTTCATCCTCCCTCAGATGCAAGGACTCGTTCAGTAGCGTGTGTGATCCGGTTCTGCCTCGCCCTGTTGGGGGTAAAACGCCGCCCCGTCGCCCCCCTCCTGCTAAACCTGCCCCGGGACGTCCTCCTCCACCCCGGAGAGACAGCATCGTGCGTAACTCCACACTACAGTCACAACACTCCACCAAAGTGAGGCATAATCTGTCGAAGAAAACGCctgtgcttcctccgagacctAATCCTGGACATCGCCTCTACAACAAATACACACTGGAAATCCCTCACGGCATCGCTGAGTACGACTACAACGGCATGCACACTGGAGAGCTCTCCTTTCAGAAAAACGAAGTGCTGGTTCTGCTAAACCAAACAGACAGCCAAACGTTCGAGTGCCAAGTAGGAAATGCGAAAGGAACCGTGCAGAAATCTTATATGAAGATCATCACACCGCTATCGAACTACTCTTATCGTGATGCCGATCCAGTGCGCAAGGAGAGCACTTCACGTCAGGCGTTCACCAATTCAGTGGAAAACGGCACTCTGCAGGTTCAAGCACTTTATGACTTCACTCCAGAGGGTCCTGGAGAACTCGGGCTGAAGGCTGGAGACATCATTAATAACGTAGAGCAGTTAGACAGCGAATGGTATTTGGGAACATCCAGAGGGATCACAGGTTTCTTCCCCATCAACTACGTCAAAACTCTGCCTGGACAGCCTGCAGCTCCACATATTCCTGCGCCTGCGCCTGTGCCTGCACCTACGCCTGCGCCTGCGCCTGCGCCTGCGCCTTCTACACTTCAGAGAGTCAGtggccCACGGTGTGTGGCGAGGTTTGACTTTGAGGGCGAGCACGGCGATGAGCTCTCATTTACTGAAGGCCAAGTGATCCGACTCCTGGAGTACATGGGAGAGGAGTGGGCTCGAGGCGAGATCGGCGGCCATGTTGGAATTTTCCCCCTCAACTTTGTGGAAGTGATGGAGGATCTTCCACCTTCACCTGCAAAGAACCAGATCAGGGTTCCTCTGCCTGgGATGGCTGCCTCAAACAACATGCAAACTCCTGCTTCAACACATAATcaggcATGTGGAGTGGAGTATGTCAAGGCTCTGTATGACTTCACGGCGCAGACAGATGGTGATCTGTCGTTCCTTAGAGGTGACGTGATCGAAGTGATAGAACACATTGATGAAGAATGGAGTCATGGAAGACTGAATGGCAGAGAGGGGTTATTCCCTACGTccttcacacagacacacacagGTGGATACTCACACCGCTAACCGGTGGAGCAGCCGGGAAAAAGCATGGATGACCAAACACAAGCAACGTGGGCTTTCGTACACACCCTGGTGCCGTGTATAAAGAatgaatttcaaataaaattgttatGTGCATGAACTTCTGGACCCTTCTTCTGGTGAAACTGAACTGTGTTCCTGTGTAGTGTGGGGGTGACATTTATATACCTGATTTCATTTACTGAATGATCTGTGCTTTTTGGATTTGAGAATTTGggtttaaatagaaaaaacttCCATTGAATGACAGTAACTGTGTTCGTCTTTACAGTATTCACGCCTGGACTTTGATCCAATGTGTAGTATAACCCtgttatatattgtataatccACCATTTTGCCTccacaagcaaaaaaaaaaaaacatggaaggTTCTTGTaggtcattcattaataaatgcaaTGTTTATATTGGATGTCCtcctttttataaaaaaaaaacaaggaaaggaAAATGTGAACTGCCATAATACAGACTACAGACAGAAGAGTGACTACGGGCCTCATTATTAAGCTGGAGATGAATGCATCTTGGCAAAAATCCTTTACACAAAAAActggtattcatgaaaaagCTGCATATAAATTTACTCACAAGAACACTAACAGAAGCCTTGATTTATCGGCTTCAGATCTTATAATATACGACGAGTTACTggatttatatacagattatgctGTTAAATTCAAATcacttttattataaacatacacaaattAAATCTAACACCGGTTCTGTTAGTGCAGCATCTGGTCAATTTTTAAGAGCCTTGTCATGGTTTGTTCTACCCTGGTAGCAGAGAACTTCTTGATTAGCAGTAATGACACTGAATTCACCTCTGTaatttctctccatattttgCCTTTTCAGGTGCTATGACTCCACTGGACACTCATCTAAATATTTTTCAGCCTCTTATAATAAAAGTACTTCACCTTCTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465494 lncRNA upstream 40032 5966729 ~ 5969232 (+) True G392578
TU465470 lncRNA upstream 108097 5882883 ~ 5901167 (+) True G392565
TU465466 lncRNA upstream 149577 5856294 ~ 5859687 (+) True G392562
TU465450 lncRNA upstream 153030 5831544 ~ 5856234 (+) False LOC113544283
TU465463 lncRNA upstream 194193 5814204 ~ 5815071 (+) True G392559
TU465532 lncRNA downstream 143817 6169964 ~ 6213340 (+) True G392610
TU465571 lncRNA downstream 342180 6368327 ~ 6376260 (+) True G392644
TU465606 lncRNA downstream 452103 6478250 ~ 6480082 (+) True G392679
TU465608 lncRNA downstream 454802 6480949 ~ 6481497 (+) True G392681
TU465609 lncRNA downstream 456391 6482538 ~ 6483100 (+) True G392682
XM_034301285.1 mRNA upstream 29369 5965484 ~ 5979895 (+) True gatb
XM_026942936.2 mRNA upstream 29369 5965484 ~ 5979895 (+) False gatb
XM_034301286.1 mRNA upstream 32518 5965484 ~ 5976746 (+) False gatb
XM_034301182.1 mRNA upstream 98672 5831983 ~ 5910592 (+) True LOC113544283
XM_026943218.2 mRNA upstream 236011 5758944 ~ 5773253 (+) False tmem154
XM_034301036.1 mRNA downstream 13267 6039414 ~ 6239078 (+) True lrba
XM_034301274.1 mRNA downstream 320601 6346748 ~ 6357763 (+) True ncapg
XM_034301276.1 mRNA downstream 320601 6346748 ~ 6357763 (+) False ncapg
XM_026943142.2 mRNA downstream 389147 6415294 ~ 6462526 (+) True LOC113544357
XM_026943145.2 mRNA downstream 389147 6415294 ~ 6462526 (+) False LOC113544357
TU461743 other upstream 5058857 934929 ~ 950407 (+) False G389438
TU461983 other upstream 5204048 804360 ~ 805216 (+) True G389525
TU461981 other upstream 5208698 790488 ~ 800566 (+) False G389524
TU465523 other downstream 200210 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 200210 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 589812 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 589812 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 589812 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile