RNA id: XM_026943123.2


Basic Information

Item Value
RNA id XM_026943123.2
length 2825
RNA type mRNA
GC content 0.50
exon number 23
gene id vit
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8207670 ~ 8237492 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtcctcctcttcctccacacacacacacacacacacactcgggaCGCTGAGCAGGAGCTGAGCAGCAGGATACGCTCAGGTCGGGATATATACAGTCATGCTTCCACGCGTGGTTTCCCTCTGAGATATTTCTCAGATTTCTCCTTGTACAGGACTAGCACTGCCTCTCAGGGTCAAGAAAACAACTGACCAACAAACTTTATCCTCTCCTTTTTCCTCCAAGATGTTGAGAGCTCCACTCATCACCGTCTGTGTTGGACTCCTTCTTATTTTTAGCAGCAAGGCTAAGCCAAATGGAAAAGACAAGAAGGCAAAACAAGTTGTGCCAGATGTAGAATGCGATGTGCGTGCAGGGAAGATCAGCTTCCCAGAATTCATTGTTCGGTGCCCCTCCAGTTGCCGTGAGACCAAGGAGAGGGTTTATGGGACGGGGGTCTTTGCCTCCATATCCAGCATCTGCAATGCTGCTATTCACAATGGGGTCATTACGAATTCTGGAGGAAAGGTGATTGTAAAGAAGATGGCAGGACAAGCGCAATATAAAGGCAGTTTTGCAAATGACATCCGCTCACTGTCCCTCCCCAACTGGAGAGAGTCTTTCACTGTCTCAGTGGGCAAGCCAAAGAAAGGTGTGATCTACCCTGCTACCTTGGAATATACTTCTTCAAAATCTGCCACAGTGATAACAAGTCAGAAGGAAGCCAAAGTCTTGGCACTCTCCACTGTATTGCCCATGACAACAGCTCTCGAGCCAATGACAACCACACTCGAgccaaccaccaccaccacgaccacaaccccacccccaactaCGACCACCACAACTACGACCACCACTGCAAAGCCACGGGCTGCAGTACATAAAGTCAGAGATGCAGGCAACAGTCACCCATACCTTGCCTCAGTGGCTGCAGCAGCCAGTGCACGGCAGACACAGAATGGCCAAGCAAAGGGTCTTCCTCAAGCATCCAGAGGTGGCTCTTTTGCAGGTAGATTCTCACCTCGTATCAACCCAGGTGCACGCAGGCCAGAGGCAGGTACCAATATTCGGAGACAGCCATCAGCTCCTGCTACCTCAGCTTTCAGTCGTGTCCAACCGGTCCAGCCTGAGAGGAACCAGCATACTGTCCACACCAACCCTGCCCTTGCTCGGAGAAAATGGTCACATCCTGCCTATGCTCAACCCGATTGGTTTTCTGGTCCAAGGAGACCAACAGATGTTAGTAACTCTGAGCCAGACACGGGCTACACGTGGAGCAACGTGGACACTGTGGATTCTCCAGCTCCAGACCCAAGACCAGATATTTCAGAGTATGAGCGCTGGTATTATAACGTCGGACAGTATCCTCCTCGACCAGCAGATACAGACAGTGGACCCAAGCACCTACCTGAAACCCTCCACACGAGAGTGGAGCCGGTGGAGGTCTGGAAGCCAGAAGGGAATCCTTTTGATTTAGACCACAATGTCCGAGGGCAAGACTCCTTACCCAGAGTTCCAGACACTCAGGGAGACCCGAACTGTAAAGTTGACATTGCCTTCCTCATGGATGGCAGCTGGAGCATCGGGAAGCGTCGTTTTAAGATCCAGAAAGACTTCCTGGCTGAGGTTTCCCAAGTCATCAATGTAGGCGTAAATGGCCCAATGATGGGGATCATCCAGTATGGGGATGATCCAGTGACAGAATTCAGTCTGCGCCAGTTCTCCAGCTCCAAAGACCTCAAACCTGCCATTGACAAGATTATCCAGAAAGGCGGGCTCTCCAATGTGGGGAAAGCCCTCTCTTACATCAACAAGCATTTCTTCAGTGATGCTAATGGAAATCGAGGAGGGGCACCCAATGTTGCTGTGGTGCTGGTTGATGGCTGGCCTACAGACAAAGTGGAGGAGGCTTCAAGATTGGCACGGGAATCAGGCATCAACATCTTTTTTGTTACCATTGAGGGCCCAGATGACAGCGAGAAGCACAATGTGGTTGAGGCCAATTTTGTGGACAAGGCTGTGTGCAGGACCAATGGCTTCTTCTCACTGCCAGTGACCAGCTGGTTTGCGCTGCGTAAGGCAGCGCAGCCTCTGGTGAAACGTGTGTGCGACACAGACCGGCTTGTGTGCAGCAAGACATGCCTGAATGCCAATGACATCGCCTTCGTCATTGACGGCTCAAGCAGCGTAGGTACCGGCAACTTCCGTACTGTGCTGCAGTTTGTGGCCAACGTGACTCGTGAGTTCGAGATCTCCGACACGGATACTCGCATTGGTGCTGTGCAGTACACTTATGAGCAGCGACTCGAGTTTGCCTTTGGCCAGCATAACACCAAGACTGATGTCCTAAATGCCATTCGCCGCATCAATTACTGGAGTGGCGGTACAAGTACGGGTGCCGCCATCACATATGCTGCTGAGAAGCTCTTCAGCAAGTCCAAGCCAAACAAGCGTAAGATCATGATTGTCATCACGGATGGGCGCTCCTATGATGATGTGCGTGCACCCGCTCTGGCAGTGCACCGCTCAGGTGTGATTGCATACTCTATTGGCATTGCTTGGGCCTCACAGGATGAGCTAGAATACATCGCCACAGACCCAGACAAAGATCACTCCTTCTTTGTGGATGAGTTCGACAACCTCTACAAGTATGTGCCCAAGATCATACACAACATCTGCCATGAATTTAACTCTCAGCCACGGAACTAAGCCAGGCATGGACCAATGGAGTTGGATCATCTAGACACCTTATTTCCACCGGAAGTATTTTTATGATGGTACTTGCAGTAGtgttaccatttaaaaaaaaaaaaaaaaaaaacataagtccttattttttctttt

Function

GO: NA

KEGG:

id description
K24506 VIT; vitrin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467330 lncRNA upstream 53892 8152460 ~ 8153778 (+) True G394156
TU467329 lncRNA upstream 55282 8151403 ~ 8152388 (+) True G394155
TU467327 lncRNA upstream 58638 8148554 ~ 8149032 (+) True G394153
TU467324 lncRNA upstream 61553 8145443 ~ 8146117 (+) True G394150
TU467321 lncRNA upstream 65077 8141847 ~ 8142593 (+) True G394147
TU467447 lncRNA downstream 42042 8279534 ~ 8280204 (+) True G394260
TU467449 lncRNA downstream 47514 8285006 ~ 8285339 (+) True G394262
TU467489 lncRNA downstream 183190 8420682 ~ 8440437 (+) True G394291
TU467505 lncRNA downstream 228777 8466269 ~ 8466602 (+) True G394306
TU467590 lncRNA downstream 423204 8660696 ~ 8661230 (+) True G394373
XM_026943106.2 mRNA upstream 38682 8154051 ~ 8168988 (+) True cilk1
XM_026943203.2 mRNA upstream 82232 8067433 ~ 8125438 (+) True LOC113544397
XM_026943204.2 mRNA upstream 82232 8067433 ~ 8125438 (+) False LOC113544397
XM_026943205.2 mRNA upstream 82232 8067433 ~ 8125438 (+) False LOC113544397
XM_026943172.2 mRNA upstream 156450 8017212 ~ 8051220 (+) False efemp1
XM_026943233.2 mRNA downstream 3147 8240639 ~ 8252667 (+) True si:ch1073-291c23.2
XM_034301136.1 mRNA downstream 26487 8263979 ~ 8279460 (+) True ddx21
XM_034301137.1 mRNA downstream 26487 8263979 ~ 8279460 (+) False ddx21
XM_034301138.1 mRNA downstream 26500 8263992 ~ 8279460 (+) False ddx21
XM_034301321.1 mRNA downstream 51799 8289291 ~ 8301011 (+) True LOC113544354
TU466595 other upstream 776760 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1306730 6896993 ~ 6900940 (+) False LOC117596330
XR_003404501.2 other upstream 1588988 6615959 ~ 6618682 (+) False LOC113544406
TU467438 other downstream 21436 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 458705 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 898465 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1863520 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1961831 10199323 ~ 10239199 (+) False LOC113544300

Expression Profile