RNA id: XM_026943172.2


Basic Information

Item Value
RNA id XM_026943172.2
length 2951
RNA type mRNA
GC content 0.44
exon number 10
gene id efemp1
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8017212 ~ 8051220 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcgcgcgCGACTGTAATTCCGATAAAGCCCGGTGATAGCTTACAGTAGAACCTGTCCGCGCCGCCCCCCTCTCCCTCCACCTCCCCACATTCCGCGTGTTCGCTATGATTACACCAACTCCTCCGCACTAAAGCGTCCACACTCACACGTTTCCAAATCGCCTTGCTGGAAGGACAAGCTGCATCCGCATCGCGCGCAGCACATCGGAGTCCCTCACATAAGGCACTGGGAGCAGGTAATGCCAGaaccTCGACGATGCCTGGAATCTACATGATAATGGCCATGTTGGCCCACGTCGTCGCCCAAGAACCGGAGGAACCCGTCACTTACACgTGCACAGATGGCTATGAGTATGATCCTGTCAGACAAGTGTGCAAAGACATCGATGAGTGCGCCATCGTTCCCGATGCCTGCAAAGGGGGTATGAAGTGCTATAACCACTTTGGTGGATACCTCTGTCTGCCACAGAATGCACAAATCTTTGTAAGCAGAGGGGATGAGATGGTGCAGCCGACTGAACCGAGTCCCCCCAACCCTCCGGTCCCTCCAAATGTGAACTCTCAAAATGTCCAACCAGGAAGCTCGCCTGAGCGTCGACTGCTTGTTCCATACAGGCCCGTGCACTGCTCACCTGGTTTCGCCTTGGATGAGCAGAATTACTGCAGAGATAGAGATGAGTGCCTCATGTCACACTATTGCATGCACAGATGTGTGAACGTCCCAGGATCCTACTACTGCGAATGTAATAGTGGCTACCAGCTTGCCAGCAACAACCACAGCTGTGTGGACGTGAACGAGTGTCAGGTGAGTCAGCCGTGTGATCATCAGTGCTACAACCTTATGGGGTCCTTTATCTGCCACTGTCGCCAGGGCTATGAGCTGGCACCAGACTCCGTTTCCTGTTTAGACATTGACGAGTGTGCCTTCTCCCGCTACATGTGCCAATACGCCTGCGTTAACAGCCCTGGAGAATATTCCTGCACTTGCCCTGAAGGATATGAGCTCCAGGGAACAAGAACGTGTCAAGACATTAATGAGTGTGAAACAGGCCACAAATGCAGCGAGGATGAGATGTGCTGGAACTACTACGGAGGCTTCCGGTGTTACCCGAAAAACCCCTGTCAAGAGCCTTATGTGCGCACATCAGAAAAcCGGTGTGTCTGTTCATCCATGAGTGCATGCCGTGGCTTGCCACAGTCCATTGTCTACAAGTACATGAACATTCATTCTGACCGTACCGTACCGGCAGACATCTTCCAGATCCAAGCCACCAACATCTATAGTAATACGCATAACACCTTCAGGATCAGAGCCGGCAATGAGGGAGGAGAATTCTTTCTGAGGCGTTCCAGCAATGTCAGTGCAATGTTGGTGTTGACCAAGTCCCTAGAGGGCCCTCTTGAGATAATCATCGATCTAGAGATGATCACCCACCACACTGTCACAAACTATCGCACCAGCTCCTTATTACGGCTTACCATCATCGTGGGACCGTTCCCCTTCTAATGGCTGCTGTACTGCCTCTTCACATGTTTAAACATATCCAATATGCTACAATCTAGCTCCCTACCATCACAGTGCCAAGAATTTATGAACTGTGCAAGTTgagtctttctttttattctttatgttcTGTATAGTTGATCCTGCTCTTCTTTTGGAACGTctgatattaataatgaattgaTATAAAAGGGGTCCACTAGCAGTTAGTTGCAGAGATACAGTATATGTGGCTTTACCTAACCAGAGACTTGTATTGACAacgaaagtgtgtgtttaacaggaTATATTTTGACAGTGAGGCAAAGTAAGTCCCAGAGAGACAGGGATTGATGCTAGGTGCTAGTGATAAAAGTTATAGCAGTATAACAATATAATGTCTTCTTTTTCATTCGAATTTCTCATATCGGGTGGATGCCCATGTTGTTCATGACCCAGATCACTACATAATTCTTCTTCAGATATAAGCACCaagtggtgagtgtgtgaccTTGTTATCCTGTGTGAGTTGGACACAAATTAAACTGAAGTcctcagcaattttttttttctttcttgaaccCTGTCCAGTGGCTCTGTCCCAATATTGACTAAAATGTTCTCAGGCAACACAATTAATGAAGTGAAATCATTTTCAATCTTGGGGACAAAACATTATGTTCTAGGGTATTTTGAACTGCACTTGAGTGTTTGCAGCAtctgttgatgagagagttaGGCACTGTTTATGTGGTTGGATGATGCCACTTTAATAAATCTAGAttcatttccttttcatttaTGAATGTTGCTTTGTAGCTAGTCTCAGTGGCAACATGGCTCTTGAACAATAAATAGCCAGGAAATGATGGCAATGCCACAGTATGGCAAAGCTTTTGAGTGTTTCCCACAAATGGATTAAATGGACTAATGCAGTGGAAAGCACTTGGCCATCTATATTAGTTCCAGTGAGGTTaccctgggggaaaaaaaaaaatctctgttcCCAGGCCAAGCTATCAATCAGCCAAATATTGTGTGTACTTTGAAGATTTGTATGGATGAATGCAGTATGTAGTCATGATCCATGTAAAAGCACGAAATTTGTTGTCTTGTAGCCATGTTACCACTCATTCTATGTGCAGCACTGATGAAGTTGGAATAACCTACTTCAAGTTACCTATGTCAAGCCTTAAGGTATTTTGTCTTTAATTGTAACCTTTGTAGAATATGTAGTTCAATCTCCAAAGTCTAACATGCAGTGCCTTATATATGAATACAGTAATAATTGCAATAGCCAACTATATTTGTATATTCAGTGCCattcacagttttaaaaagataaagCTCTATGCAGTTGGgaatcttttctttatttaaaactgatttaataCATAATCATGAATGTTTTTTGTACTCTGAAGCAGAAgagaattgttttaaaaaataaaggttaTATTTAAGATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404486.2 lncRNA upstream 10426 7990732 ~ 8006786 (+) True LOC113544216
TU467152 lncRNA upstream 92378 7923946 ~ 7924834 (+) True G393997
TU467149 lncRNA upstream 94866 7922145 ~ 7922346 (+) True G393994
TU466613 lncRNA upstream 488657 7448634 ~ 7528555 (+) True G393484
TU466576 lncRNA upstream 645711 7367880 ~ 7371501 (+) True G393450
TU467277 lncRNA downstream 9583 8060803 ~ 8061192 (+) True G394103
TU467316 lncRNA downstream 86062 8137282 ~ 8137508 (+) True G394142
TU467321 lncRNA downstream 90627 8141847 ~ 8142593 (+) True G394147
TU467324 lncRNA downstream 94223 8145443 ~ 8146117 (+) True G394150
TU467327 lncRNA downstream 97334 8148554 ~ 8149032 (+) True G394153
XM_026943269.2 mRNA upstream 38593 7958883 ~ 7978619 (+) False LOC113544437
XM_026943268.2 mRNA upstream 38593 7958885 ~ 7978619 (+) True LOC113544437
XM_026943265.2 mRNA upstream 381165 7620100 ~ 7636047 (+) True LOC113544435
XM_026943190.2 mRNA upstream 597577 7413196 ~ 7419635 (+) True LOC113544382
XM_026942869.2 mRNA upstream 607408 7401374 ~ 7409804 (+) False si:ch211-63p21.1
XM_026943203.2 mRNA downstream 16213 8067433 ~ 8125438 (+) True LOC113544397
XM_026943204.2 mRNA downstream 16213 8067433 ~ 8125438 (+) False LOC113544397
XM_026943205.2 mRNA downstream 16213 8067433 ~ 8125438 (+) False LOC113544397
XM_026943106.2 mRNA downstream 102831 8154051 ~ 8168988 (+) True cilk1
XM_026943123.2 mRNA downstream 156450 8207670 ~ 8237492 (+) True vit
TU466595 other upstream 586302 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1116272 6896993 ~ 6900940 (+) False LOC117596330
XR_003404501.2 other upstream 1398530 6615959 ~ 6618682 (+) False LOC113544406
TU467438 other downstream 207708 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 644977 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 1084737 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 2049792 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 2148103 10199323 ~ 10239199 (+) False LOC113544300

Expression Profile