RNA id: XM_026943189.2


Basic Information

Item Value
RNA id XM_026943189.2
length 2158
RNA type mRNA
GC content 0.47
exon number 15
gene id slc30a6
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8414473 ~ 8437196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTCTCTGAAACCCAGCGAGAAGAAGCAGCGCTCCAAAATGGCGATGGACGGTATGTCCACGTCTGCATCAGGACTACCATACCATCATGTTTCCGACTATTATCCCAGGAAACTCGGTCCGAAGCCGGACGTGGTGCCTTCTGGTGTAACCGAGAGGAAAACCGGACCTGCAGATAAACCTGACATGGTCTCAGTGGACGTTATCAACTTCAAGGACTCGGATACACCAGTACACAGGAAGAAACTAGAAACAGACACATATGTTCTGggcaccatacaccCCTTCCGCAAGTCACACAAGTCCGTCTTTAGCAAGTTCATCCAGGAGTTCAACTTAGTCACTTCAGATAGACGGTCGTGGAAGATCCTACTATTTGGGGTGCTGAATATAATCTGCACAGCTTCTCTGCTGATGTGGTGCAACTCCACAAACAGTATGGCCTTAACAGCCTACACATACCTCACCATTTTCGATCTTTTCAGTTTGATTACATGCCTCATAAGCTCCTGGGTGACCATGAAAAAACCAAGTCAGGCCTTTTCATTTGGTTTCGAGCGCTTTGAGGTGCTGGCAGTGTTTGCCTCTACAGTGCTGGTTCAGCTGGGAGCTTTGTTCATTCTGAAGGAAAGCGTGGAACGTTTCATGGAGCAACCAGAGGTGCACACGGGGCGCCTTTTAGTCGGGACCTTTGTGGCTCTGTTTTTCAACCTGCTGACTCTCCTTTCAATCAAGAACAAGCCTTTTGTCTATGTTTCTGAAGCTGCCAGCACCAGTTGGCTCCAGGAGCATGTGGCTGATCTGAGTCAAAGTCTATGTGGGATCGTCCCAGCACTGAGCAGCGTTCTTTTGCCACGAATGAATCCCTTCGTCCTTATCAACCTGGCTGGAGCTTTTGCTCTCGGAATCACTTACATGCTCATCGAGATTAAcAACTATAACGCAGTGGACACTGCTTCTGCCGTAGCGATCGCGCTCATGACCTTCGGCACCATGTATCCCATGAGTGTGTACAGTGGAAAGGTCCTTCTCCAGACTACTCCTTCCCATGTCATTGGACAGCTTGACAAAGTGCTTAGAGAGGTCTCTACACTGGATGGAGTTTTGGAAGTCCGGAATGAACACTTCTGGACAATAGGCTTTGGCTCTCTGGCCGGCTCCGTCCATGTGCGCATCCGGCGGGACGCCAACGAGCAAATGGTGCTGGCTCATGTGACCAATCGCCTCCACACACTTGTCTCCACACTCACTGTACAGATCTTCAAGGACGATTGGACGCGTCCATCCTTGTCCACTGGCCCTCTCAACCTCTCTGATATCGCAATTTCATCTGGAAAGCAACTTGAAGAACCGGAGCCACTGACTTCCACTCCCTCTAAACTGAGCAGTCCGCCGCCTGAGTTCTCCTTCAACACGCCTGGCAGGAATGTGCGGCCTGTTTTACTCCCAAATTTTCATCAGCAACGACCGTACAACTTGGGCCTTGCATATGGATCTTCTCCGTACAATACGATGCTCAGTCAGGGCTTAACGCAGCCAGGAAGCAGCCTAGGTGTGGGTTTGGGGACAGGACCAAGAATCCCCTCTATTCAGAGCTACAGGACTTCTTTTAGTGCAGCTCCACAGATATACGGAAGCAATCTGCTGCCTTCACAGAGCAGTCAGTATAAACACTGATGCACTGTCCAAGTTGGACTAAAGCATGGACTAAGAGCAGGCTGAGCTGCAGAGGACCATaactattatatttaattaataggACCAACAGTCTTCTCTTTAAAGGGTTTTCTAATTGCATTGTCCTTTTTGTACTGTTAAACAGATCGCagatgtattaaaaatatatgtaatatgttgtttTACCACTGCTGTTGCTTTAAGAGGGTTGTGTTATAAGAGACCATGATttattgtaacttttggactCCACGGGAAGTGAATCAACTTTTGTGTTAAGAAGACTTGGGTGTTTTATGACTTGATCAGAGGACAGGTAATTGTCTGCCCAGAAATGCTTGAATACAAGCAAATATCtgtattgcatttaaaaaataagatattGAATTACTGTTGAAGCATCATACGTTGTAAGAGGATTAAATTTTACCCAGTAACTACAGAAATCAATTACTCGTATCAAGTAAAATAGTAAACTAC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14693 SLC30A6, ZNT6; solute carrier family 30 (zinc transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467449 lncRNA upstream 129134 8285006 ~ 8285339 (+) True G394262
TU467447 lncRNA upstream 134269 8279534 ~ 8280204 (+) True G394260
TU467413 lncRNA upstream 179313 8234679 ~ 8235160 (+) True G394229
TU467330 lncRNA upstream 260695 8152460 ~ 8153778 (+) True G394156
TU467329 lncRNA upstream 262085 8151403 ~ 8152388 (+) True G394155
TU467505 lncRNA downstream 29073 8466269 ~ 8466602 (+) True G394306
TU467590 lncRNA downstream 223500 8660696 ~ 8661230 (+) True G394373
TU467767 lncRNA downstream 415348 8852544 ~ 8852767 (+) True G394520
TU467774 lncRNA downstream 475684 8912880 ~ 8913084 (+) True G394527
TU467802 lncRNA downstream 570678 9007874 ~ 9008080 (+) True G394555
XM_026943208.2 mRNA upstream 3932 8400794 ~ 8410541 (+) True LOC113544399
XM_026943209.2 mRNA upstream 3932 8400794 ~ 8410541 (+) False LOC113544399
XM_026943138.2 mRNA upstream 25026 8378414 ~ 8389447 (+) True chs1
XM_034301039.1 mRNA upstream 64347 8329665 ~ 8350126 (+) True LOC113544353
XM_034301321.1 mRNA upstream 113462 8289291 ~ 8301011 (+) True LOC113544354
XM_026942941.2 mRNA downstream 37688 8474884 ~ 8486535 (+) True LOC113544248
XM_034301390.1 mRNA downstream 58880 8496076 ~ 8583090 (+) False LOC113544387
XM_034301389.1 mRNA downstream 83880 8521076 ~ 8583090 (+) True LOC113544387
XM_026943101.2 mRNA downstream 172271 8609467 ~ 8623393 (+) True slc12a10.1
XM_026943122.2 mRNA downstream 225048 8662244 ~ 8685925 (+) True nvl
TU467438 other upstream 155171 8258928 ~ 8259302 (+) True G394251
TU466595 other upstream 983563 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1513533 6896993 ~ 6900940 (+) False LOC117596330
XR_003404502.2 other upstream 1795791 6615959 ~ 6618682 (+) False LOC113544406
trnal-cag_18 other downstream 259001 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 698761 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1663816 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1762127 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other downstream 1762127 10199323 ~ 10224804 (+) False LOC113544300

Expression Profile