RNA id: XM_026943190.2


Basic Information

Item Value
RNA id XM_026943190.2
length 4185
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC113544382
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7413196 ~ 7419635 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGAAACACTGTGAACATACTGCCTGGAGTGGGTTCATTTTTTTACCAAGTACTTGACAGCTACTTGTTATACTGGAAGAGTTTTTTACTGGAGGAATACAGAATGAGGAGAAAGTGAGTTCCAAAAAGAGGTGAAGGCTAGTCATGGCTGTGGCTCGGCTTTGTCCTTTACGTGACTTGCCAGCATCCTtgaaagcagagagagaagacaaGGAAGGAAAAGGAGACAGAAGCAAACAACACGAAAGCAGCTGAAGAGACATGAATTACACAGAGGAAGACAAAAACTCTGAAGAAGACAACAAGAAGGCAAGATATATGAAGCTATTACAGGGAAGTGAGCAGCAAATGGAAAACAGTCATAATGGGCTTTTTCATactggtgatgatgatgatgatgatgatgatgatgatgacgatgccaacaacaacaagaagcaACAGTTTAAGAAGACATCctttgataatgataatgataatgataatgatgccACTAACAGTGAAACCAGTGAGGAATATGAAGAATATCCAGAAAAGCTATATTACCACCCAGCCTACCCAAACAGCATTTTCCAAGCTTTGGAAGAAATGAAACGATTGTATTTCCTCACTGATCTCACCATAAGAACACAAAGTGAGGTTAATTTCCATGCTCACTCTTTAGTCCTGGCTGCCGTGAGCTCCCTCATCCAGAAGATGCTCCAGCAAGTGAATgaaaagaacaagagagagatATTTTTACGTGTTGGTCCAGAAGTATCTGATTTGGGCGTATCTGCAGTGTTGGAGTTTGCCTACACTGGAACCATCTCTGATTTGAACAGCGGATCTTTAGCTCAGGTTCAGGCTGCTGCTCTCTATCTGGGAGTTCCCAGGGTTTTGAAGATCTgcaaagaagaagaggaaagacagagaaagaaagatggtgagaagaagatggaggagaAAAATAGTAGAATCTCTGCTGAAGAACAGAAGAAGGTCAGCTTGCAGTCGATCAGGCAGCTGTGGGAAGAGAGAGTGGGCTGTGATGTGGAGGTGGTGGCTGAAGGAAGAATATTTAGTGCACACAGGGTCATCCTGAGTGCCAGCAGTGACTACTTCCGTGCAATGTTCAGCAGTGGTATGAAGGAAACCCACCAGACCTCAGTGTCCCTGCTATTGATGGGGGCACCTGAACTAGAAGCCCTTCTTCACTGCTGCTACAGCGGAGATCTGTTTCTTGATTGGGGCTGCATTTTCGAGCTCACCTCCACTGCTCTTCAGTTCCAATTCCAACCGGCTCTCTCGCTCTGCCTCAACTTTATGCATCAGGAAATGGATGCTCACAGATGTCTGGATGTAGCTGCGTTTGCCGAGGCTTATGAAATGAATGACTTGCAAGAAATGGCAGAAGATTTTACGCTTAGGCATTTTGAGGACGTAGCAGCCACTCTGAAATTTCAGGACCTGCCAGTGGAGAAGCTGAAGACATATCTGCGTAGCAATTACCTCTGTGTAACATCAGAGCTGTCTGTGTTCAGAGCAGTCGTATCTTGGATTGAGGCCGATCCATGGACTAGGGTGAAAGAAGCCAGGGATCTAATGAGAACTGTCCTATTTCCTCTCATGACCTTTACAGAATTCAGAGAAGTGAAGGTTATAATGTCATGGCCACAAGTCAGTGACAGGGACCTTTATGAGTCCCTGTTTGAAGAGTTCTGTACCAGTACCTTTAATTCCCATTCAGACTTTAGGACCTACCTTCCTAAAGAAACTTTGGTCCTTGTTGGTGGTGAAAGGATCACCGAAAACCTTGAGAAACGCATACCCTGTAGGGAAATATGGTTCAGCAACTCCTTCCGTAACCATGTTGGCCTAATGAAAAGAGTCGAATGGAGAAAACTGGGAGACTTACCAGAGAAACCAAGATTCTGCCACAGTGTTACAGTAATAAGCGGGAAACTATATGTAGTTGGTGGCCGACATTATTACGGAAAGGATGACACTATGAAATGCACCTACAGCTATGATCCAATCCAAAACAGCTGGCAAAGGTTGGCTGATATGAATGAGAGAAGGGACAACTTTGCTCTTGTGGTTTTGGATGGAAAAATGTTTGCCATAGGTGGAGACAAAAATTCAGAGGTCAACATAGGAAGTGTGGAGGTCTACTGTCCTTTTACAGATTGTTGGAGCTTTGTTCACCCTCTGGACCAACCCTTAAGTAGTCATGCTGCCAGTGTATGGAATGGAGAGATTTTCATCTCAGGAGGCTTTGACAGCAGATACCAGTGCCTGGCATCCATGATGTTCTACCACCCAGAGAAAGGCACCACATACCTTGTAGATATGTCCCAGAGCCGGGCCCAGCACTGCATGGAGACCTTGAAAGACTGCCTATATGTAGCTGGTGGAGTCTCAGGTGTGGGTGGACAGTTATTTGACCAGCTAGCCTGCGAGTTCTTTGATCCAGTTAATGGTTACTGGTGTGCCATTATGCCCATGTCTTTGCCTCATGTCAGTGCAGCATCTGCAGTGTTGGAAGGAAAGATTTATATCATTGGTGGCTATTGCCATGAAGACTATAGCGACACAAAAGTGGTCCATAGGTTTGATCCTGCAATGCAACATTGGGAGAACTTGTGTGGAACCCCTGGTTCTAACACATATATAGCTGCTTGTGTACTGGCTTTACCTCATCACCTTAGACAGTGAAGACTTTTGCTTTATCCAGCTCTATAACTTCCTGCGTTTTATATTAGAAAACTTTATTAGAAATAAAGCTAATTGTAAACCGTCATATAAGGTTTTAGATAATaatctccaaacacacactggaatataatttctttaatgtaatgttttctgGTGTATTACCATGTTTGTGAAATCCCCGTGAACACAACATCTAATAATTCAGCATGTTAAAAActccaaaatatttcatttttttataataggGCTTTAGtctgctttcattttcttttcacaataAAGTTATATATAAGGACGTGTCTCTTATGGCCCTCTAACTGCACATGTTACAGGTTGTGAAGAAGTAGGGTGACTCATTGTGGTGCATTTACACAAATATGGTCTTGTGACTAAGCTACTTGTCACATACTGTGGACTGGTGTGGGATGTTGGCACCCCGTGTACAGAGAGTGCACTCAGAGAGTACACAGTGTTCAGCGTAGGCCACTGGACATGGTTTAGCCTTACAGACTGAAGCTGAATGTATTAGCAGAGCCTCAATATATCACCTAAGTCTTGGTTGAGCGTCTTCACATGGATAACCAGTAAAccttgattcatttttttcattcatcttcagtaaatgcttaaTTCTGGTTAGGGTTATCTTGGggacactgggtgtgaggtggaaaTACATTCTGGATGGGACACTCATTCACAATTTTATATAGCCAGCCATGTTTTTGaacagtgagaggaaaccagagaacccagagcaAAGCCCaggaacacagggagaacatgcgaaactccacacaaacagtcaCCCGAGTTCAAGATCGAACCAGAAACCCTGGATCTGTGAGGCAACAACACTACTGCTGTGCCATCACCTGTGAAACCAAGTCTTATTATTCCCATTACTATTTCTGAAAACTTCTTTTTAACCACATCAGAAAATGTTTGTTGCATTTTTCTCAATAATGACAGTGATGTCATGACTATCTTTTGCTTATTCATCTgtaaattataatgtatatgaGTTCAAAGTTATTGAAGGGCCAGAAATCTAGGAAAACATATGGTGTACAGGACTGAATGAGTCAGTGACTACCAATGATCTTATTGGTTATGAGCTTTTGGTAATGAGTATTGGGATGgtcaaagtaaaaaattaaGTACCTCTGTAGTATACtgtaatagaaatataaaaattaaaaatagcaatatAATCGAAGAATAATACCATTTGTTTCTACACCAAAAGTTGTTATGCTATCCATAAATTttagatcaggtgtgttaaagcaggaaaaacagGGCTTAGTTTGTATTTACTGTCCATCTTCTGTTAGTCTGCAGCTTCTGAACATTAGGAATCAGGAGAAAGGTTTAATAAGCATGGCCAAAACTTACCAAAagagttttaaaatattgaatttatttgcattttaagtCATTAAATAATTCATTGACTTCATATAACACATTTGCAGAACAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466576 lncRNA upstream 41695 7367880 ~ 7371501 (+) True G393450
TU466519 lncRNA upstream 63679 7291238 ~ 7349517 (+) True G393394
TU466517 lncRNA upstream 81095 7310813 ~ 7332101 (+) False G393394
TU466466 lncRNA upstream 168078 7177820 ~ 7245118 (+) True G393351
XR_004577477.1 lncRNA upstream 250165 7155377 ~ 7163031 (+) True LOC117596340
TU466613 lncRNA downstream 28999 7448634 ~ 7528555 (+) True G393484
TU467149 lncRNA downstream 502510 7922145 ~ 7922346 (+) True G393994
TU467152 lncRNA downstream 504311 7923946 ~ 7924834 (+) True G393997
XR_003404486.2 lncRNA downstream 571097 7990732 ~ 8006786 (+) True LOC113544216
TU467277 lncRNA downstream 641168 8060803 ~ 8061192 (+) True G394103
XM_034301380.1 mRNA upstream 3392 7401369 ~ 7409804 (+) False si:ch211-63p21.1
XM_026942870.2 mRNA upstream 3392 7401372 ~ 7409804 (+) True si:ch211-63p21.1
XM_026942869.2 mRNA upstream 3392 7401374 ~ 7409804 (+) False si:ch211-63p21.1
XM_026942963.2 mRNA upstream 106666 7301639 ~ 7306530 (+) True LOC113544270
XM_026942923.2 mRNA upstream 371284 7034279 ~ 7041912 (+) True LOC113544234
XM_026943265.2 mRNA downstream 200465 7620100 ~ 7636047 (+) True LOC113544435
XM_026943269.2 mRNA downstream 539248 7958883 ~ 7978619 (+) False LOC113544437
XM_026943268.2 mRNA downstream 539250 7958885 ~ 7978619 (+) True LOC113544437
XM_026943170.2 mRNA downstream 597577 8017212 ~ 8051220 (+) True efemp1
XM_026943172.2 mRNA downstream 597577 8017212 ~ 8051220 (+) False efemp1
XR_004577472.1 other upstream 512256 6896993 ~ 6900940 (+) False LOC117596330
XR_003404500.2 other upstream 794514 6615959 ~ 6618682 (+) False LOC113544406
TU466595 other downstream 7983 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 839293 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1276562 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 1716322 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 2681377 10101012 ~ 10116924 (+) True agpat4

Expression Profile