RNA id: XM_026943203.2


Basic Information

Item Value
RNA id XM_026943203.2
length 5893
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC113544397
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8067433 ~ 8125438 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTTGGTATACAGCTCTCGCATCCATCCGGTTGGCCGCTGCACACACATGAGCCACGAAGGCTGATGGAGTAACAGCAGAGCATCTTTATTCACGCGAGCTCGTTTTACTCTGGGATGACCATTTCTGGAGCTTGGACTTCCGGAAGTTCGTTTGGACATCGCTATGGGTTTTTCTCATTGTGTCGCGCGCGCCGTGTGACAGGCCGTTAGAGATGTAGCGTCCAGCGGGGACTGATAAACGCGTTAGCTTGAGCCGGCCTCAAAACTCAAACATGTCTACCCGGGTGCCTTTACCCACTGTAAACGAGCGAGAGACTGAAAATCACACATCCCTGGACGGCTTTTCTACCAAACTGGCGAGCCGCCAGAACCTGCCTCGCTGCAGGAACTCGCTGAGCACCAGCGTGGACGAGCAGCCGCATATCGGCAACTACCGCCTACTCAAGACCATCGGCAAGGGGAACTTCGCCAAGGTCAAACTGGCACGACATGTGCTCACTGGACGAGAGGTGGCTGTCAAAATAATAGACAAAACCCAGCTGAACCCCACAAGTCTACAAAAGcTATTTAGGGAAGTCCGAATAATGAAGATCTTGAATCATCCAAATATAgtgAAGTTATTTGAAGTAATTGAGACTGAGAAgacactttatttaataatggaATATGCCAGTGGAGGTGAGGTGTTTGATTATTTGGTGGCTCATGGCAGGATGAAAGAGAAGGAAGCCAGGGCAAAGTTTCGTCAGATTGTATCTGCAGTGCAGTATTGCCATCAAAAGAGAATAGTACATAGAGATCTTAAGGCTGAAAACTTATTGCTGGATGCCGACATGAATATCAAGATTGCCGACTTTGGCTTCAGCAATGAGTTCACGGTGGGAAATAAGTTGGACACGTTCTGCGGCAGTCCTCCCTACGCCGCCCCTGAACTCTTCCAGGGCAAAAAATATGACGGGCCTGAAGTAGACGTCTGGAGTCTCGGGGTCATCCTGTATACGCTCGTCAGCGGATCACTACCTTTCGACGGCCAAAACCTTAAGgagctgagagagagagtgttgagAGGAAAGTACCGCATCCCCTTCTACATGTCCACAGACTGTGAGAACTTGCTTAAAAGGCTATTAGTGCTGAACCCCATCAAACGGGGCAGTTTAGAGcaaaTCATGAAGGATAAATGGATGAACGTGGGCCATGATGATGTGGAGCTGCAGCCGTATACTGAACCAGAGCCTGATTTTAGTGACAGTAAAAGGATCGAGCTGATGGTGACTATGGGATTCCCAAAGGATGAAATCACGGAGGCTCTCAAGGGACAGAAATATGATGAAGTCATGGCTACTTATCTCTTATTGGGAAGAAAACCTCCAGAGattgaaGGCATTGAGTCTGTGTCCGTCAGCAATCTGTGTCCCAGGCCCCGCCCTACCAGTGACATCAATACCAGCACTAGCCAGTCCCCTTCACACTCCAAGGTCCAGCGCAGTATATCGGCCAATCAGAAGCAGCAGCGGCGGTTTAGCGATCACGGTGGGGATGACATAAAACCAATGGGTCCCTCAGTCCCGCCTGTAGTGTCGTACACTAAGCGCAGCTGTCTAGAGAGCGAACAGAAGGAGGAGTGTGAGAACTCACGCAAGCTGCTAAGCTCCAACTCAAAGGGAGACGTACCAGCATCTCCTCTGGCCGCTCTGGAGAGGAAGAAATCTGTTACTTCGGCTGGAACTAATGGAGGCATGGCACGCAGaaatacatatgtgtgtgagcGCTCAGCTGACCGTTCCTCCGCCATACCCAATGGCAAAGACAGCAGttTAACAGAGGTTTCGGGCAGCACTACGTCAGCCTCTGGTGCTGCTTCAGCTCTGATGTCTACAAGACAGAGATACTTGAAATCCGTGTCTTCCACAGGCGCCTCCTCCAAAACCACCCTGCCGCCTATAGAAGACAACAGCGAATACAAGGGAAGTCCAAGCGCCAGGCCTCCATCCACCTCACCCTCCGACCATAGCATCAGCACTCCAGAGCGCACTCATTTCCCCCGAGGGACGTCCAGCCGGAGCACCTTCCATGGAGCGCAGCTACACGAGCGCCGCAGTGCCACTTACAACGGCCCACCTGCCTCGCCCATCCTCTGCCATGACACAGGCGCCCTAGCACCAGCACGCCGGGGCACATCCACCGGCATCATCAGCAAAATTACCTCCAAGTTTGCCCGCAGGGTTCCAAGTGAAGGGGAGGCAAGTGGCAAGTCAGAGTCGCCAAGGAGCACTGTGGGAGAATCGAAAGATGAGACTCGCGACTCAAAGCCACGCTCACTGCGCTTCACATGGAGCATGAAGACGACATCTTCCATGGAGCCAGGCGACATGATGCGTGAGATCCGCAAAGTGCTAGACGACAATGGCTGTGACTACGAGCAGCGAGAGCGTTTCCTGCTTTTCTGCGTGCATGGTGATGCTCGCCATGACAACTTGGTCCAGTGGGAGATGGAAGTTTGCAAGCTACCACGCCTCTCACTCAACGGTGTGCGCTTTAAGCGCATTTCAGGCACATCCATCGCCTTCAAGAACATTGCCTGCAAAATCGCTGATGAGCTGAAGCTCTGACAGGGGCACAGAAAGGAAACAATGTGGCTCAAAGTGGGCTTGCAGCGGTAAGTTTGGTTCATATTTGGCTAGAGCCGAGGTGCTGCCTTAACAGAATGTGCGGTGCTCATCCTGTAAGTTTTGCTTTTCCATTAACTTTTATCACCTTCACTTCTGATGTAGGCCCCAATCAGTGATGTTATTTGGATGCTGATGGAATTATGTGTGTGCTGGTCTGGGAAAACTTGTTGCTGTggccaaaaaagaagaaaaggggaTTTTTCTGCATACATACTTTGACACCATGACTTAGGAAACCATAAATATAGTATACTTCACCGGAAcagcatggaaatgtttttatttacctttttaatCCTGCCTTGGTTGttttcctgcaaagatcatgttgggtaaggagccagtttaacaaatatgGTGGTAAAAACAATCAGTCTACCTAAAGAGTTCTAAAATCTTGCTAGATAAGTActatttcctcacacagtgaatgtcaggctttgattGAGTTGTTTGGGAGCTATGTTCCGTATAGCAAACCAGACATAAGCttaatcagttcagttttagATGcaggctgtcaaaatgtctgtaaagCTCCTGCACTACAGTATCTGTAAATCACTTTTAAcaccattttaaaatgctatagcTTGTGCTTGTAAtaaatgcaaaagagaaacatatttcaattCAGGAAAACTGATTtgagaactatatatagtagaaaatattaaaatttcaccaagtgaagggttttcccaggccgccacacatacacagtgccTTGGAGACGTATTCACCCCcctgaatttttaattttagttggtttttttcaaaattatttaacaaaaaaataatttagttgCAATgctagttgcataagtattcaccctcctGAGTAGAACCacagctgcaagtcttctgGGATACGTCTTTATCAGCTTTGCATATCTGGATCCTgagaatttttgcccatttttgaCAGCAAAGCTCTGTCCAATTGGATGAAGATCATCAATGAACAGTAATTTTCTAGGCAGAGATTCTCAGATTGAGGTTTGGATTTTGGCTAGGCCAGTTTAACAAATTCAGGTCCTTGCATTTGATCCACTCCAGTGTATCCTTGGCAGTATGCCTTGAGttgttgtcctgttggaaggtgaagCTCTGCCCCAATCTCAAGTctcttgcagactggaacaggCTTTTCTTCTAGGATTGTCTATTTGGCATCATTAAGCttgccctcaaccctgaccagtttcccagtccctgctgctgaaaagcatccccacaacatgatgctaccacaaccatgcttcactgtgtggatggtgttctcagtgtgatgagcagtgttgggcaTCTTCCCAGCACTGGCGCTTTGGTAAAGGTAGCGCTAGATAGAAAGGTAGATTTCCCAAAGGTAGCGCTTTGTGCAGAGGCCAAAAAGTTCAGTTTAGGTTTCATtagaccagagaaccttttccCACATGCTTGTTGAGCCTAAAACATGCCTTTTGGGAAATCCATggcttttttcctcttctctgcaCTTTTCCCCATTGTGGAGTCCCCGGGctatggttgtcctgtgaaAAGAattacttatgcaatcacaacttttatattttttatttgtaaataattttggatttttggaaaAGGTCAAGGGGTACATACATATACAAGGCACTGTATAGTGTGAGTGTTACGCTCTGTCAATAGTATTCAGGGGTTTGGTGTACATTCTGTGCAACAGCCACCTTTAAGAGAGTGGTGAATATTACTTTAAGTGTAGGAAAACATTATGGCCAATATGGTGAAGatgataaacacaaacactgaatatCTACAAGTTAAAATTTGTATCCTCCTTTGTAATAACATAACCATAAATGCCAACATTGCTATACATTAATGAAAGCTAATGGTCACCAGTTAGTATTATGCAAGTTGTACTGTGCTACTTTGTAGCTACTAGTTTTCATCGTTATTAGGCACATTCGCATTTTGACTGCAGGTACATTCCCACCTTTTATCCACTTGTACTAAGAGAATAATCTGCTACGTGTTTAATAgccattttaaatgatttctctGTTGACTGAGCTACCAAATAACCAGTATGGATTTTCAAATTGTACAGTTTAGTACATAGAGAGACACGGCTATTTATCAAAGACTGtattatatgaatatgcatatgTCGTCCTGCAGGTGTGGTATGAATGTTTTGATTGCTGTACAGGATAATGTTTGggaacatttttacaattttagtTGTTCcttaactttttgttttttattacattaagtTGGGGAAAAGATTTCAATCTTTCAGAGAAGCCATGGAAGAGTTTAAGGCTGAtgatgccacacacacacaaaaaaaaaagaaatggggACTTCATAACAAGGATTTGTTGCACTAAGTATTACATTGAGTGGTACAAACCCTCTACTTGCACAACCTGTTGACACTGGAGAAATATTGAGAACTGGAGAAAACATTTGAAACACATTGTGATCGTACAGTTCATtatattttgctcatttgtGCTGCATATACTTAGCCTTTCTTGTATTTATTCCATTACACTATGCCTGCTATGTGCTGCTTTGTATTAGAGAGGCATTTAGTGTTTGATAAAAGAATAATGAGAAAggaattatatttgtttttattttgttttatagctATGCATTGCCACATGCAATAGTATACTTTATGTTGGATATTCAGGTTTTGTCACAcatagaaggagagagagataaaaaaaaaaaacgatgaaTGTGTGACATTAAatagaaagcaaaaaaacaagtttttgcctttaaaaagggttaaatttaaataattcttTAGGGGTTATAAAGATGCTTCATAAATGTAGTAAATAATGCATCTAATTGATCACATATGGAACTGTGACCAGAACAGTGGACAAGCTGTGTATGTGGATACTACTATCTGTGGCTCATAGAGGGATTGAAATAGTCAGAAACACAAAAACGGTCTCTGTGTCCATGCAGCAAAGCACATGCTGGTTTGCCACTAAAAATCTGAAGTGTTAAAAATACATACTGGCATTTGTGTGTGCACGGCTCTTGTTCAGGACCATCCATTTCACTGGTGCACAATATTAAACTTACTTGAATTAAACATAACATGAAAGTGTGTTCATGACCATTTTTACACGACTAGTTGGATAAATGCTGCATGTATGCTGGTCACTGCTGCTGAGATTCCACTATTAAAAAAGTAGAGCCTGA

Function

GO: NA

KEGG:

id description
K08798 MARK; MAP/microtubule affinity-regulating kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467277 lncRNA upstream 6241 8060803 ~ 8061192 (+) True G394103
XR_003404486.2 lncRNA upstream 60647 7990732 ~ 8006786 (+) True LOC113544216
TU467152 lncRNA upstream 142599 7923946 ~ 7924834 (+) True G393997
TU467149 lncRNA upstream 145087 7922145 ~ 7922346 (+) True G393994
TU466613 lncRNA upstream 538878 7448634 ~ 7528555 (+) True G393484
TU467316 lncRNA downstream 11844 8137282 ~ 8137508 (+) True G394142
TU467321 lncRNA downstream 16409 8141847 ~ 8142593 (+) True G394147
TU467324 lncRNA downstream 20005 8145443 ~ 8146117 (+) True G394150
TU467327 lncRNA downstream 23116 8148554 ~ 8149032 (+) True G394153
TU467329 lncRNA downstream 25965 8151403 ~ 8152388 (+) True G394155
XM_026943170.2 mRNA upstream 16213 8017212 ~ 8051220 (+) True efemp1
XM_026943172.2 mRNA upstream 16213 8017212 ~ 8051220 (+) False efemp1
XM_026943173.2 mRNA upstream 16213 8017212 ~ 8051220 (+) False efemp1
XM_026943269.2 mRNA upstream 88814 7958883 ~ 7978619 (+) False LOC113544437
XM_026943268.2 mRNA upstream 88814 7958885 ~ 7978619 (+) True LOC113544437
XM_026943106.2 mRNA downstream 28613 8154051 ~ 8168988 (+) True cilk1
XM_026943123.2 mRNA downstream 82232 8207670 ~ 8237492 (+) True vit
XM_026943124.2 mRNA downstream 82232 8207670 ~ 8237492 (+) False vit
XM_026943125.2 mRNA downstream 82232 8207670 ~ 8237492 (+) False vit
XM_026943127.2 mRNA downstream 82232 8207670 ~ 8237492 (+) False vit
TU466595 other upstream 636523 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1166493 6896993 ~ 6900940 (+) False LOC117596330
XR_003404501.2 other upstream 1448751 6615959 ~ 6618682 (+) False LOC113544406
TU467438 other downstream 133490 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 570759 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 1010519 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1975574 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 2073885 10199323 ~ 10239199 (+) False LOC113544300

Expression Profile