RNA id: XM_026943209.2


Basic Information

Item Value
RNA id XM_026943209.2
length 1517
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC113544399
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8400794 ~ 8410541 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGGCTCGTACACCTACTTCCAGAGCAATGCCATTCATCTAAGCTCAGTTGCATAAACAAAGAGGGAACTACCTAAGCAGGGATGCAGAGAGTGGAGACAGTGGAAGACCACAACACAAGCATGAACTCTTTCCCAACCAAGTTCCAGTCCAAAGTAGAGATGGCCAAGAGcatgagagaggaggagaaactCTACAGGTATAATGGTGTACTCTATCCTGTGATCATAAGCCCAGAGGAGAACCTCAGAGCTTTGGAGACTGTAGAGGCACGGAGTGATGATATAATGCTGGTGGCTTATCCAAAATGTGCTAGCACGGGAGAGAAAGTAGAATCCAAGATGCCACCTCTCCTGGAATTCTTTGGACCAGAAACTCTGCAGTTACTTCACCAGGCCCCATCTCCAAGATTACTGGGGACCCATATGCATCCCGATAACATTCCGGCTTCTTTTTACCAAAAGAAAACTAAGATGCTGGTCGTTTTCCGCAACCCAAAGGACACACTGGTCTCATTTTATCACTTTTCAAATAAGAATCCGGTTTTGCCAACTGCTGAGCCCTGGGATCAGTTCTTCATGGATTTTATAAGCGGTGAAGTTCCATGGGGCTCCTACTTTGACCATGCTCTTGCCTGGGAAAAACGCATGAATGACCCAAACATCATGATCATCACATTTGAGGAACTCAAGATGGACCTCAGTGGAAGTGTTCAGAAGGTGGCAGAGTTTTTTGGCTTTAAATTAACTGATGCTCAGATCCAGAGTATTGCAGAGGAGAGTACCTTTGATGCCATGAAAAAAGGCTCCAGAGATTCCCATGGCCAGATGGGAAATGTATTTTTCAGGAAAGGTGAAGTTGGAGACTGGAGAAACCACTTCAGTCAGGCCCAGAGTGAGCAAATGAATGCTGCATTTGAGAAGCATCTTGGAGGGACAAAACTTGGAGCCAGACTAAATTATGATGTGTATTGCAAGTGAAGAAGGGAAACCAGGCACTGTAGTGCAGCAGGGAATGATACCTCAGGGAATGGGAGTACTTCACCTACAGGACagaaccagattttttttctttcacagatTGAGTACATTAAGATTGAAACCAGTTTGGCAAAGATAAGACAGGCTAAAATCACATgattacatacactatatagtcaaatgtatgtggacacttgatcctcacacccatatgtgggccttccccaaactggtgccacaaagttggaagcacacaattgtctagaatgtctctgtatgctgtagcattaagatttcctttcactggcaCTAAGGGGccgaaacctgttccagtatgacaatccCCCGTGGACAAAGTGACAAAACTCTGCACATACAGCAACCTGAGTTCAGGATCAGActagagaccctggagctgtgaggcagcaatgctacccactgtgccactgtgccaccatcagtttgttgttttaataattacatgTAGTTAATTACATTGTCTGAATAAATTTATACACATGATAGTTTTAACAGTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042221 response to chemical biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467449 lncRNA upstream 115455 8285006 ~ 8285339 (+) True G394262
TU467447 lncRNA upstream 120590 8279534 ~ 8280204 (+) True G394260
TU467413 lncRNA upstream 165634 8234679 ~ 8235160 (+) True G394229
TU467330 lncRNA upstream 247016 8152460 ~ 8153778 (+) True G394156
TU467329 lncRNA upstream 248406 8151403 ~ 8152388 (+) True G394155
TU467489 lncRNA downstream 10141 8420682 ~ 8440437 (+) True G394291
TU467505 lncRNA downstream 55728 8466269 ~ 8466602 (+) True G394306
TU467590 lncRNA downstream 250155 8660696 ~ 8661230 (+) True G394373
TU467767 lncRNA downstream 442003 8852544 ~ 8852767 (+) True G394520
TU467774 lncRNA downstream 502339 8912880 ~ 8913084 (+) True G394527
XM_026943138.2 mRNA upstream 11347 8378414 ~ 8389447 (+) True chs1
XM_034301039.1 mRNA upstream 50668 8329665 ~ 8350126 (+) True LOC113544353
XM_034301321.1 mRNA upstream 99783 8289291 ~ 8301011 (+) True LOC113544354
XM_034301137.1 mRNA upstream 121334 8263979 ~ 8279460 (+) False ddx21
XM_026943189.2 mRNA downstream 3932 8414473 ~ 8437196 (+) True slc30a6
XM_026942941.2 mRNA downstream 64343 8474884 ~ 8486535 (+) True LOC113544248
XM_034301390.1 mRNA downstream 85535 8496076 ~ 8583090 (+) False LOC113544387
XM_034301389.1 mRNA downstream 110535 8521076 ~ 8583090 (+) True LOC113544387
XM_026943101.2 mRNA downstream 198926 8609467 ~ 8623393 (+) True slc12a10.1
TU467438 other upstream 141492 8258928 ~ 8259302 (+) True G394251
TU466595 other upstream 969884 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1499854 6896993 ~ 6900940 (+) False LOC117596330
XR_003404502.2 other upstream 1782112 6615959 ~ 6618682 (+) False LOC113544406
trnal-cag_18 other downstream 285656 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 725416 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1690471 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1788782 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other downstream 1788782 10199323 ~ 10224804 (+) False LOC113544300

Expression Profile