RNA id: XM_026943218.2


Basic Information

Item Value
RNA id XM_026943218.2
length 1726
RNA type mRNA
GC content 0.42
exon number 11
gene id tmem154
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5758941 ~ 5773253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTGACCTGTAGCAACAAGTTCGCTGCTGATTGCATCACATCcgcacacacatagacacacacagagagagagagagagagagagagagagagagacttttccTCCTCTAGGTGAGTCAAAGCTGAAAGAGGAAGCAGGATGTCATGACGGAGGGCTGGTGCTATGGCACTATGTCTGTCTCTGCCCAGAGTAAGGGCCACTACTGCCACAAAGGATTGTGGGAAATGACCCCCGATGTTTTGCTGTTGATCTTGGCACTGGCAGCCTGTCTGACTGAGCCTGTTCACTGTAAGAAGGACAATGGAACTAGATTTCCAGAAACAGAAGCACAACGCACTGAAGAACGGATCTcagtgaatgtaacacacactcctgcagtGACCAATGTAACATGGAACAGCACCAttgcagTTGACACCCAGGAGGAATGGTTTTCCGGAGGTGCTGAAACATATGCGCAGGTTACTTTGGAGCATATTTCCACGACGAAGCTGATTCCTAATGTAACACGTATAAAAGCACCCAACACGACCACAGaagtgAAGCGTAAGTCAGTACCCTACACCTCCTTTGATAACACTACATTAGAAAACCAAAATGATGAAGAGCAAAATAACAACACGCAGGAAGATGACGAACAGGAAGAGGACAAGTGGAAGGTCTTCTTTATCATCATCGCAGTGTGTATGTCCCTCGTTCTGCTCCTGGCAGCCGTCGTGGCCAGATTAGTGATCACACACAGGAGGAGGAACAAAAACACAGCCGATCCTGAGAAGGACGACCCGTATCTggatgatgaagatggagagaaagtgcCAATgCCCATGTTTGAAGACGACATGCCCTCTGTGATGGAGCTGGAAATGGAAGATATTGAGAAATGGATGATAAAAGGAGGGAGTGACATCAGCATGGACTCAAAACAGAGGCATCCTTCATGAACACACTTCtGTAATTGCAGTGGGAGtcggatagagagagagagagagagagagagagatggagcacTCGGTATCCTATCACACTAGTAGTGTCTtttctctgaacacacacacacacacacacacacacaaacaccctcTCTGAATCCttattggaaaaacatcaccattacatttaaatgcaaaaaaaaagacataggCTATCAcaattcctgtgtgtgtgtgtaaaagaacCTGCACTGTTTTTGAAGTCtactgagaacacacacacacacacacacactcactgggaTTCTGCTCAACTTCTTCCTAATACAGCCCTTTTTATAACAACATGACATATAGGAAAAAGTTTGAGCCATAACAGGGCaaactgtgtatgtatgatgGGTAGATCGGGACATAATTAGGCTGGCAGTGATATGCATAAGTGATgttataatataaatttttcttTATGCATTCCTGTGAGATTAGGAGGCCCATCAGAAATCATACTTAATAGTGTTTGTTAACATGGTCACATTCACATTTCCTGTCtgtttctttgttcttttttttttaatttaaatgtgttttattactcgAGATGGATATATTGctgttttttgtaaatatggaGAACATACTATATtttgcagccattttgttttcttattatgAGTTTTATGAGTTTCGTATCTTCACTCTGCTACTGTTTGTTTAAACCCTTTTGTGAACTGAGATactttgtgtggtttttttaatTCCAACAATTAAACACTGTCATTTGTGTAGTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464506 lncRNA upstream 68545 5689350 ~ 5690399 (+) True G391673
TU464507 lncRNA upstream 71828 5686409 ~ 5687116 (+) True G391674
TU464505 lncRNA upstream 74927 5683798 ~ 5684017 (+) True G391672
TU464504 lncRNA upstream 75323 5683382 ~ 5683621 (+) True G391671
TU464500 lncRNA upstream 76221 5681730 ~ 5682723 (+) True G391670
TU465463 lncRNA downstream 40951 5814204 ~ 5815071 (+) True G392559
TU465450 lncRNA downstream 58291 5831544 ~ 5856234 (+) False LOC113544283
TU465466 lncRNA downstream 83041 5856294 ~ 5859687 (+) True G392562
TU465470 lncRNA downstream 109630 5882883 ~ 5901167 (+) True G392565
TU465494 lncRNA downstream 193476 5966729 ~ 5969232 (+) True G392578
XM_026943206.2 mRNA upstream 147329 5606322 ~ 5611615 (+) True si:cabz01076231.1
XM_026943207.2 mRNA upstream 147329 5606930 ~ 5611615 (+) False si:cabz01076231.1
XM_034301335.1 mRNA upstream 165375 5589900 ~ 5593569 (+) True LOC113544404
XM_034301336.1 mRNA upstream 165375 5589900 ~ 5593569 (+) False LOC113544404
XM_026945167.2 mRNA upstream 316219 5437417 ~ 5442725 (+) True epdl1
XM_034301182.1 mRNA downstream 58730 5831983 ~ 5910592 (+) True LOC113544283
XM_034301285.1 mRNA downstream 192231 5965484 ~ 5979895 (+) True gatb
XM_026942936.2 mRNA downstream 192231 5965484 ~ 5979895 (+) False gatb
XM_034301286.1 mRNA downstream 192231 5965484 ~ 5976746 (+) False gatb
XM_026943116.2 mRNA downstream 236010 6009263 ~ 6026147 (+) False sh3d19
TU461743 other upstream 4808537 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4953728 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4958378 790488 ~ 800566 (+) False G389524
TU465523 other downstream 453104 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 453104 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 842706 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 842706 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 842706 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile