RNA id: XM_026943233.2


Basic Information

Item Value
RNA id XM_026943233.2
length 1279
RNA type mRNA
GC content 0.42
exon number 7
gene id si:ch1073-291c23.2
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8240639 ~ 8252667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcttctcctcttctgtaTTTGCAGTGAACTTTTGGAAtggcacacacatatacacacgcaatCCCAAACATGGTGTCTCAGTCTCCACCCCGTCCTCTACTCGTCCCACTTTTTACCATCCCCCTTTGCCCcctcccctctttgctgttgtGAAACACTGTAAAATCTACGCGCCTCACCCACAGCCAGTTGAAGAGATGGACACAAATGCAGGTAGTGAGCCCATGCAGGAGATTAAGGGACCAAGCACACAAACTGCCGGTGGCGCTAAACCTCTGCACCGCTTCCTCAGAGGAGAGCCAAGATCTGTTGggATTGTGCTGTTGTTCCTGGGCTTGTGTATGTTCTTGTTTGGGATTCCTCTGAAAGGAGACATTATGGAAACATCAGCAGAAAACTATAGCCCCTTTTGGCTGGGCATCTTGTACTTTATTTGTGGTGTTCTGTACATACAGTCAGAACGCAACACCACGAAAAAGATGGTCACAATTAGTCTTGTGTTTAGTATCCTTGCAATACTTGGGACTTTAGTTGGTGCAATAATTTTCAGCAAAACTTTAGCCTCACACTCTTATCATTATATGATGTATCCAGAGAATTTCAACGACAACGAAACACAAGTGACCGTGGAACATTATATGCAGCTCTACAGCCTGGAAGCCGTGTTCCTGTTCCACAGCTTGGTGGCGGGAGTGATCCTCATTGCCATGACTGTGTTCGCCCGTCTAGCACTGCGCTCAACTCATACACAGATGTTCGTGGTCATGCGTTACCCACCTTCAGCAGAGTGAGGCCTCTTTAGAGAGACCTTGGGTGAACTCCAAACGCTAGTCTGTGATAGAGAGCTCATTAGAATTCATTCTAACAAGGAGGTGTCGTcaagaaaactgaaaagaacAAGTTACTTGTGACAGTGTACACAGGAAACAAATTGAAAGCCGTTTGCTTAATGGCTAATTAACTTAGCTCTTCAGGCCACACTGTATGATTGCTAGAAATAAAGACTGTGAAAAAAATCTTGTTAGAATGGGATCTCTATGCTCTAGCGTTTGGGATGGAGCATACTCATATCTTACCATTCTTTTCCTTCTTGgcataaaaaaacaactgaaatgtGAAACATTTCACTATAGcatacacataaacactgtactagttcatatatggaaatgtataTTGCCAAATaatctttttaattttgtattgaaTAAATCTAACAAAACGATGATGACGTTTTGATGTAAACAACCACTGActataataaatgcatttttgtatA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467413 lncRNA upstream 5479 8234679 ~ 8235160 (+) True G394229
TU467330 lncRNA upstream 86861 8152460 ~ 8153778 (+) True G394156
TU467329 lncRNA upstream 88251 8151403 ~ 8152388 (+) True G394155
TU467327 lncRNA upstream 91607 8148554 ~ 8149032 (+) True G394153
TU467324 lncRNA upstream 94522 8145443 ~ 8146117 (+) True G394150
TU467447 lncRNA downstream 26867 8279534 ~ 8280204 (+) True G394260
TU467449 lncRNA downstream 32339 8285006 ~ 8285339 (+) True G394262
TU467489 lncRNA downstream 168015 8420682 ~ 8440437 (+) True G394291
TU467505 lncRNA downstream 213602 8466269 ~ 8466602 (+) True G394306
TU467590 lncRNA downstream 408029 8660696 ~ 8661230 (+) True G394373
XM_026943123.2 mRNA upstream 3147 8207670 ~ 8237492 (+) True vit
XM_026943124.2 mRNA upstream 3147 8207670 ~ 8237492 (+) False vit
XM_026943125.2 mRNA upstream 3147 8207670 ~ 8237492 (+) False vit
XM_026943127.2 mRNA upstream 3147 8207670 ~ 8237492 (+) False vit
XM_026943129.2 mRNA upstream 3147 8207670 ~ 8237492 (+) False vit
XM_034301136.1 mRNA downstream 11312 8263979 ~ 8279460 (+) True ddx21
XM_034301137.1 mRNA downstream 11312 8263979 ~ 8279460 (+) False ddx21
XM_034301138.1 mRNA downstream 11325 8263992 ~ 8279460 (+) False ddx21
XM_034301321.1 mRNA downstream 36624 8289291 ~ 8301011 (+) True LOC113544354
XM_034301039.1 mRNA downstream 76998 8329665 ~ 8350126 (+) True LOC113544353
TU466595 other upstream 809729 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1339699 6896993 ~ 6900940 (+) False LOC117596330
XR_003404501.2 other upstream 1621957 6615959 ~ 6618682 (+) False LOC113544406
TU467438 other downstream 6261 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 443530 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 883290 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1848345 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1946656 10199323 ~ 10239199 (+) False LOC113544300

Expression Profile