RNA id: XM_026943278.2


Basic Information

Item Value
RNA id XM_026943278.2
length 2291
RNA type mRNA
GC content 0.45
exon number 13
gene id lpcat4
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6699072 ~ 6710755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGccctgaaaacaaaaacaataacaataacaataacaagctCCTTTCTGATTCTATTTCTGGaccgagtttttttttttttttttttctcccttctttTTCTTGGAGTGTTGCGTCAAAACAAAACTTTGGCTAATTCCTCTGTAAGAAGACTCTTTTGCTCCACAGAGAAACACACCAGGGCGACATTTTCTGCTGATAAACTGAACGTCCAAAGACTTTTATTAGCTTTTCCTGCGACTTATTTTTCTACCCTGATTGAGTGGCCATGGAGAGATGTGGAGAACCCTCCCCGACCTACAGACACACTCACCCGTTTATCCACGAGGTCAAACTGACCACGGCTCAGAAAATTCGGAGTACCATACTGGGCTGTGTCCTATTCCCCATTCGCATCACTCTTACCATCCTGTTCTTCCTGCTCATGTGGCCCATCGCTCGGCTCCGACTAGCCGGTCTGTCGCAGGAGGAGAGAGCAAAACCGGTCCAAGGCTGGAGACAATGGATTTTTCATCCCATCATGATGTTCCTGAGTCGATCCGTGTTCTTCTCCATGGGCTTCCTCTGGATAAAGGTGAAAGGTCGGCAGGCTACACAGAAAGAGGCACCGGTGTTGGCCGTGGCACCCCACAGTGGCTTTCTGGATATGCTGGTACTCAGCCTTGCGGGACTGCCAACAGTGGTGTCGCGCTCTGAGAACGCCAAACTGCCAGTCATCGGAGcacTTTTGGAGTATAACCAGTCCGTATTGGTTAGTCGGAAGGATCCTGAGTCGAGGAGGAAGTGCGTGTCTCAAATCAAAGAAAGACTCACTTCAAATGGTTACTGGCCTCAGATGCTAATGTTCCCTGAAGGAACCACCACAAATGGTCGAGTCCTCATCAAATTCAAGCCTGgtGCTTTCTTGGCAGGCGTTCCAGTTCAGCCAGTGTTGCTTCACTACCCTAATAAAATAGACACTGTGCGCTGGACTTGGAAAGGCGCATCATGGCTCGATTGTCTCTGGTACACCTCGGCTCAGTTCTACAGCAACGTTACAGTGGAGtTCCTACCTGTGTACACACCTTCccaggaggagaaggaggaccCTGAGTTATTTGCAGATAATGTTCAGAGACTCATGGCCAAagtcCTGGGAGTTCCCGCTACAGACTTTGTGATGGAGGGGCTTTTTCCTGTTACAAAGTTGGGCGGCCTCTCCCTTCCTCTCGAGTCTCCTTCCAGAGAAACACTGAAAATGCTCAAAAGTCAAGGtttaAGTAATGCTCAAGTGGAGACTTTGATAAACacaatgattgacagctgtcaCTCAGGACAGGTCACAATCACTGTTGATAACTTGACTTCCTTGTTGGGACtcgcagacagacagacagcagcacAAATCTGTTCCTTCTACTCCGAGAGTGACACATTGGACCTGAGACAGCTGTGTTTGAGCTTGTGTACGGCTGCAGGACTCAGGACGCCAGAGTCTCTCCTTCACACTGCGTTCACGcTGTGCGACAGTAGTGGTGATGGCTTGCTAAGCGCAGAGGACTTCTCCGGCCTGATGGCAGCGCTGGTGGGAGTTGCTCAGTACAACATTGCAGAGATGTACTCGGAGTTGACCAAGAGAGGACAACCAACTGAGGGTGCATTGTATGACTTGCTAACGACTCACCCAACATATCAGAAGTTCTTCAAAGAATACTTCGAGCATGAAGACGTAAGGCTCACGGCAGACAGAAATCACAACGGCATTCCGAACGGAAAGACCAGTCGCGGTAACGACAGCATTCATAACAGAAATGGACTGAACAAAAAGTCTGACTGAAGACGAATTCATTTAAAGTATATGCTGTATTTTAACAGGAAAATGGGGACATTTATGAAGTGTACACAGTTTCCACATAGCAATAGATTTTAACAAAGGCTGTATGTTTTTGTATGGATTTGCAAAAGATGAGAGAAGATTGTGTGTGCGTTTTAGTATACAATTAATGTTTACAGGTCTGTGTCATGGACtctttgtggggttttttttgtttgtttgtttttgtattatttctttttttgcattcattGTAACCCAAAGCCATTAGTACACTGTGAAAAGCCACTATACTATCGGAACCTTAGTGCCTTGgtacttttactgtttttaaatgttagctgaaggattttgttttgtgttcctgtgtgtattttatatctCTTCGTGAGCCTACGGACTTCATATCAAGAATACTATCGagctattttacattttaatatattacggttgtaaataaaacaattcataaGATTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13512 LPCAT4, AGPAT7; lysophospholipid acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466092 lncRNA upstream 34023 6663754 ~ 6665049 (+) False G393056
TU466093 lncRNA upstream 34023 6663754 ~ 6665049 (+) False G393056
TU466091 lncRNA upstream 34150 6663754 ~ 6664922 (+) True G393056
TU465609 lncRNA upstream 215972 6482538 ~ 6483100 (+) True G392682
TU465608 lncRNA upstream 217575 6480949 ~ 6481497 (+) True G392681
TU466166 lncRNA downstream 10127 6720882 ~ 6745244 (+) False G393113
TU466168 lncRNA downstream 10127 6720882 ~ 6745244 (+) True G393113
TU466170 lncRNA downstream 10127 6720882 ~ 6742535 (+) False G393113
TU466172 lncRNA downstream 10127 6720882 ~ 6725255 (+) False G393113
TU466173 lncRNA downstream 10127 6720882 ~ 6742210 (+) False G393113
XM_034301392.1 mRNA upstream 2652 6688520 ~ 6696420 (+) False emc4
XM_026942872.2 mRNA upstream 2652 6689075 ~ 6696420 (+) True emc4
XM_026943064.2 mRNA upstream 11716 6673138 ~ 6687356 (+) True si:cabz01101003.1
XM_026943061.2 mRNA upstream 27835 6646391 ~ 6671237 (+) True LOC113544317
XM_026943063.2 mRNA upstream 27835 6646391 ~ 6671237 (+) False LOC113544317
XM_034301357.1 mRNA downstream 10090 6720845 ~ 6745254 (+) True nop10
XM_034301355.1 mRNA downstream 10090 6720845 ~ 6742131 (+) False nop10
XM_034301356.1 mRNA downstream 10090 6720845 ~ 6738548 (+) False nop10
XM_026943059.2 mRNA downstream 11040 6721795 ~ 6745250 (+) True LOC113544316
XM_026943060.2 mRNA downstream 11041 6721796 ~ 6745250 (+) False LOC113544316
XR_004577479.1 other upstream 80390 6615959 ~ 6618682 (+) True LOC113544406
XR_004577472.1 other downstream 186238 6896993 ~ 6900940 (+) False LOC117596330
TU466595 other downstream 716863 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 1548173 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1985442 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 2425202 9135957 ~ 9137421 (+) False LOC113544250

Expression Profile