RNA id: XM_026945168.2


Basic Information

Item Value
RNA id XM_026945168.2
length 1248
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC113545709
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5074892 ~ 5078909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGCCCTTACTGTGAGGTCATCAGCATGCGCCAAAACCGGTAAGCGCTGTGAGAATGGTTGTGTCTGTATTACAAACATAGCTATTAAAAGAGCGTTTAAAGAATGAAGTCGgcgaaagaaaagaaaagaaagcactCTCGCCGAGAGTCGGCTGATGGAGACAGAAAAAGGAGAAGCACTGAATCCAGTGTggagGATCCAAAGGAAGAGGTGAATCATGTGCAGGCAGTAAAGGAAGAGCCGAGCGACATCGAGGAAGGTGGCCTGGATCTCACTGTGCCTTTCAAACCCATCAGTGCTTATGTGAGCGACAGGCAGGAGATGCTGGAGCAGTGCTTCCACGTCCTCGGCCAAAACAAGCTGAAAAAGATGCTGCCAGACGAGCTGAAGGACTGCACGTTTACGGAGATCAAGACACTCTGCTGGGATCAACTGCAGCAGCTGTCCGAGAACAATCTGCTCCAGATACTGGAGGGTAAAGAGGTGACTGCTAACTCAGAAGCCGAAGAGAAAGAGACTAAAAGGACTCCAGTGGACAGTCAgcAGGACAACAATGTGGACTCCACATCATCTGTGAAAGAGACTGCTGAAGGAGAAGACAAGCAAGGTTTATCCGGAGAGGAGAGCGATGTTCTGAGCATTAACGCTGACATGAATGACAGTGACATAGAGGGCCACAAGGACCCCAAACCCCAAGAAGAGGAAGTCCCTGCTCCCACGGTGACGCCCCCGTCGTCCTCCGCCCCGCCTCCTGAACCGGACCTCCAATCAGACGAGCCGAAGCTGGAGCTTCAGCGCGACATTGACAGGAGCGTCAGTGAGATCCTTGCTTTGACCAATCCCAGCACTGACAAGGCAGAGCTTAAGCTACATTTGCAGCCGATTGCTATGGAAGTGGCTcctgcatcacttcctgttcctgctgCAGCACCGTCAGCACAGCAGCTGGCACTTCTGGAGTTAGAGATGAGAGCGAGAGCTATCAAAGCTCTAATGAAGGCCAACGAGGTGAAGAAATAAACTCTGCTGGCTCGAGTCAATTCTGAGGTCATATTGGCTTCTGGAATTTTGTTCAAGGAACATATGCAGCCATATTGGCTTcttgtgattttgtttttgtttttagtacCTGAACGTGCCAGTAGGATGGACACAGTTTGAATTTAGAGATCGAACATTTTCAGTTGAGTGAACTGGCTAGCACCATGGCCCATTTCAAATAAATGACCTTactgttgatttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577463.1 lncRNA upstream 486 4864296 ~ 5074406 (+) True LOC117596306
XR_004577464.1 lncRNA upstream 486 4864296 ~ 5074406 (+) False LOC117596306
XR_004577465.1 lncRNA upstream 486 5070934 ~ 5074406 (+) False LOC117596306
XR_004577466.1 lncRNA upstream 73404 4864297 ~ 5001488 (+) False LOC117596306
TU464304 lncRNA upstream 328363 4744921 ~ 4746529 (+) True G391512
XR_004577517.1 lncRNA downstream 17339 5096248 ~ 5156707 (+) True LOC117596386
XR_004577518.1 lncRNA downstream 97181 5176090 ~ 5185657 (+) True LOC117596387
TU464372 lncRNA downstream 293132 5372041 ~ 5376797 (+) True G391574
TU464420 lncRNA downstream 325612 5404521 ~ 5404752 (+) True G391612
TU464377 lncRNA downstream 407567 5486476 ~ 5489315 (+) True G391576
XM_034301208.1 mRNA upstream 217918 4463898 ~ 4856974 (+) True LOC113545745
XM_026945220.2 mRNA upstream 217918 4484087 ~ 4856974 (+) False LOC113545745
XM_026945234.2 mRNA upstream 217918 4484087 ~ 4856974 (+) False LOC113545745
XM_026945228.2 mRNA upstream 217918 4484087 ~ 4856974 (+) False LOC113545745
XM_026945237.2 mRNA upstream 217918 4484087 ~ 4856974 (+) False LOC113545745
XM_026945370.2 mRNA downstream 108650 5187559 ~ 5231439 (+) True LOC113545783
XM_026945385.2 mRNA downstream 288535 5367444 ~ 5369498 (+) True LOC113545788
XM_026945297.2 mRNA downstream 334981 5413890 ~ 5419090 (+) True LOC113545754
XM_026945293.2 mRNA downstream 349128 5428037 ~ 5436881 (+) False alpk1
XM_026945294.2 mRNA downstream 349130 5428039 ~ 5436881 (+) True alpk1
TU461743 other upstream 4124485 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4269676 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4274326 790488 ~ 800566 (+) False G389524
TU465523 other downstream 1147448 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 1147448 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 1537050 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 1537050 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 1537050 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile