RNA id: XM_026945199.2


Basic Information

Item Value
RNA id XM_026945199.2
length 1576
RNA type mRNA
GC content 0.42
exon number 4
gene id si:dkey-22i16.9
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 751135 ~ 755659 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagaagaagagaaagaatgcaaaagaaacaaaaacacatttctcaAGGTCAATAACGGACCttgagaaatgtaaaaaaaaaaaaagtaaaaaaacaagtGTTAAAAACTAAtcagtgatctttttttttttttttaaaggacgCAGCTCGTGAGCAGGatgtttttgctgtgttttctcGGTCTGCTCACCTTCTCGCCCGTGACCTCTGGCCTGACGGTGGTGCTTGGACACACGGCCACCATTCCTTGTAATCGTAGCTGTTCTACAGTTAAATGGTTTAGAAAGGAAATCCTGGTGTGTAGTTTTGCTGAAGGAAAGTTCACCATTGAGCCGGGGTTTAAGGGAAGGATCGAGTTCTCAGAAGCAAACCTGAAACAGGGAAATGCCTCCCTCACTATAACCGAGGTTGTGTACAACGACAGAGGCTGGTACGTGTGCTCCTGTGACGGCGATTTGGGCTGTGACCACTACCTGGAAGTAGTCGTTCCGACTTCATTGACCGTCGTTTCTGGTGAAAACGCTAAGCTGCCTTGCTACGCCGAAACGGACAAACTCACAGCTGAATCTAACGCCAACATCCGATGGGAAAAAGATGACAAGCTCGTGGTGAAGCTAGCAAACGGAGAGATGGAGTTTGGTGCAGGATTTCAGGATCGAGTTTCTGTTTCCAAAGAGGATTATAACAGAGGAGACCTCTCTCTCACCATCGATGACGTCAGGCCCTCCGAAGCTGGCTTATACACGTGCTTTGTTCCGAGTGAAAAATCCAAACAGCCCGAGATCATCGCTCTCATCGTTAAAGATTCCCCACCACGCTGGCTCACAGAGCATTATATCTCAGTGGTGTGCGTTATCATCGTAGCTGTTGCGGCAGCTCTCCTGTGGGCTCATCGCTGGAAACTATTTACAGCTGTCTGTTGTCCACACTCACAGCATCGCCCAGTTCCACAAGCTGAGGGAAGATGAATgagctgcttcttcttcttcttttttctatcCTATCTAAACTTGaacaatgttttatttgctgctattaatgtgtatatattatgtttattcTCAACTGGCATTGGGAAATCTCATTGGCAAAACAGTTAAGCATAATGTAAATTAAGTATATTAGCTACAAAAAGGCTCAATGGTTAAAgactctgggttactgatcagaaggtcaagTCTTAGATCCCTCAAACTGCCATTAAGCAGGCCCATAACCTGTTCTCCTAACCCATGAATATGTGAAGAAGAGAATTTCACTGTGATGTAATTTATACGTGACAAAGATTTCTTCATCAAAAGAATAAGCTATTGAATAGAAACGAGTGCTCTGGTGTGTTAGGATCACTAGAGAAGAAACTTTAGGACCAAGTAGAATTTACTTCctaaattttactttaaattaaaCACTATACTTCCTTAAACACACTTTGGTTTTGTATTTTCCGTAGTATGAGATGATATGTCCATCTCCAGACCAAGTTTCAGTGAGGGACGCAATAACACAGTCACTGTGCACGTCTGTTCCTCAAGCATTTCCGGGAGCGTCAGTTTTAAACataaagctgtaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461961 lncRNA upstream 9829 736859 ~ 741306 (+) True G389515
TU461946 lncRNA upstream 19970 612303 ~ 731165 (+) True G389506
TU461943 lncRNA upstream 92397 604419 ~ 658738 (+) True G389505
TU461762 lncRNA upstream 241404 444407 ~ 509731 (+) True G389441
TU461740 lncRNA upstream 249980 438504 ~ 501155 (+) True G389438
TU461982 lncRNA downstream 31862 787521 ~ 794335 (+) True G389524
XR_004577511.1 lncRNA downstream 183007 938666 ~ 939174 (+) True LOC117596382
TU461729 lncRNA downstream 183389 939048 ~ 950362 (+) False G389438
TU461721 lncRNA downstream 190461 946120 ~ 950362 (+) False G389438
TU461723 lncRNA downstream 193351 949010 ~ 950362 (+) False G389438
XM_034301312.1 mRNA upstream 1240 746707 ~ 749895 (+) True LOC113545734
XM_026945202.2 mRNA upstream 23218 724127 ~ 727917 (+) True LOC113545725
XM_034301029.1 mRNA upstream 185172 564837 ~ 565963 (+) True LOC113545735
XM_026945201.2 mRNA upstream 233216 512810 ~ 517919 (+) True LOC113545724
XM_034301028.1 mRNA upstream 251581 461305 ~ 499554 (+) True LOC117596316
XM_034301314.1 mRNA downstream 3113 758772 ~ 762952 (+) True scpp9
XM_034301310.1 mRNA downstream 8647 764306 ~ 767760 (+) True odam
XM_026945207.2 mRNA downstream 57913 813572 ~ 821979 (+) True scpp5
XM_026945203.2 mRNA downstream 68222 823881 ~ 826736 (+) True enam
XM_034301309.1 mRNA downstream 68222 823881 ~ 826736 (+) False enam
TU461928 other upstream 402800 333502 ~ 348335 (+) False LOC113524533
XR_004577502.1 other upstream 422656 290979 ~ 328479 (+) False smu1b
trnak-uuu_21 other upstream 433481 317582 ~ 317654 (+) True trnak-uuu_21
XR_004577501.1 other upstream 440415 290979 ~ 310720 (+) False smu1b
TU461802 other upstream 576943 170557 ~ 174192 (+) False G389456
TU461980 other downstream 31717 787376 ~ 794335 (+) False G389524
TU461975 other downstream 34829 790488 ~ 797329 (+) False G389524
TU461976 other downstream 34829 790488 ~ 797329 (+) False G389524
TU461981 other downstream 34829 790488 ~ 800566 (+) False G389524
TU461974 other downstream 37894 793553 ~ 797329 (+) False G389524

Expression Profile