RNA id: XM_026945203.2


Basic Information

Item Value
RNA id XM_026945203.2
length 1013
RNA type mRNA
GC content 0.46
exon number 6
gene id enam
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 823881 ~ 826736 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTTCATTTCCAGGAGCCGTGAGATATATTTTCCACATGTGCTGTGCGTTGAGGTGCTCGACTTCTCGACTTCTCGACTCACCTCGTATCGTGGACTCGGTGCTCTGGACCAGGCAGATTAAGATGAAGTCTGTGGTTTTCCTGATGTGTTTGGTGGCCCACTCACTAACGGCTCCTATACCTGAAAGTGGCAGTGACGAGATAGcagctcagacacacacaagccttCAGCTAATGGAGCTGTACCGAATGTACAACCATCTGCTGCAGCAGGGTATTGCAGCTCCAGCTCCACCTCAGCCTCAGTTTGATGGATTCTACCAACCTGGAGCTGCAGCACCACTAAACTCTGATGAGGCAGAAGATGCTGAAGAGGCTGAAGAGGCTGAAGATGCTGAAGAAGCTGAAGGAGCTGAAGGTGCTGAAGGAGCTGAAGTTGCTCAAGGAGCTGAAGGTGCTGAAGGAGTTGAAGGAGCTGAAGGTGCTGAAGGAGCTGAAGTTGCTCAAGGAGCTGAAGCTGCTGAAGGTGCTGAAGGTGCTGAAGGAGCTGAAGGTGCTGAAGGAACCGAGCCAGCAGCTGAGGAACCCACTCTTGACCCAACCACCACTGACCCTGCTGCTGTTTCCATTGATGCCCCAGCTGACCCTGAAGTTCCTCTCGATTATCTTCTGGCAACAAATGATCTTAATGTTGAGTTTAATGTTGCAGACGGCTTTGATCCAGCAACAATAACAGAATCTCCTCTTCCATATCTTCCATAAACGATAACTTTTAATCAGaaacattactgtaataaaGGCCGAAGCCGTGTTGCTGTATGTTGTTATGTTGAAGATGTGGAACATGTAGCTGGAAATTGGAAAGACGCAGTTTGATTTGATCAAgtatatgactttttttaaagatatttgtAACTGAAGTTTAGCAGTTTGTATGAACATAATGGAGTTTCATGTGTGAGGATTAAGTCTGttgtttcttaaaaaataaaaaaatgcccAAAAACTGCAA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461982 lncRNA upstream 29546 787521 ~ 794335 (+) True G389524
TU461961 lncRNA upstream 82575 736859 ~ 741306 (+) True G389515
TU461946 lncRNA upstream 92716 612303 ~ 731165 (+) True G389506
TU461943 lncRNA upstream 165143 604419 ~ 658738 (+) True G389505
TU461762 lncRNA upstream 314150 444407 ~ 509731 (+) True G389441
XR_004577511.1 lncRNA downstream 111930 938666 ~ 939174 (+) True LOC117596382
TU461729 lncRNA downstream 112312 939048 ~ 950362 (+) False G389438
TU461721 lncRNA downstream 119384 946120 ~ 950362 (+) False G389438
TU461723 lncRNA downstream 122274 949010 ~ 950362 (+) False G389438
TU462012 lncRNA downstream 153687 980423 ~ 998703 (+) True G389542
XM_026945207.2 mRNA upstream 1902 813572 ~ 821979 (+) True scpp5
XM_034301310.1 mRNA upstream 56121 764306 ~ 767760 (+) True odam
XM_034301314.1 mRNA upstream 60929 758772 ~ 762952 (+) True scpp9
XM_026945199.2 mRNA upstream 68222 751135 ~ 755659 (+) True si:dkey-22i16.9
XM_034301312.1 mRNA upstream 73986 746707 ~ 749895 (+) True LOC113545734
XM_034301289.1 mRNA downstream 1103 827839 ~ 832209 (+) True cnga1a
XM_026945196.2 mRNA downstream 24597 851333 ~ 877393 (+) True tacr3a
XM_034301308.1 mRNA downstream 80145 906881 ~ 916289 (+) False bdh2
XM_034301306.1 mRNA downstream 80146 906882 ~ 916289 (+) False bdh2
XM_034301307.1 mRNA downstream 80149 906885 ~ 916289 (+) True bdh2
TU461983 other upstream 18665 804360 ~ 805216 (+) True G389525
TU461981 other upstream 23315 790488 ~ 800566 (+) False G389524
TU461975 other upstream 26552 790488 ~ 797329 (+) False G389524
TU461976 other upstream 26552 790488 ~ 797329 (+) False G389524
TU461974 other upstream 26552 793553 ~ 797329 (+) False G389524
TU461743 other downstream 108193 934929 ~ 950407 (+) False G389438
TU465523 other downstream 5399621 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 5399621 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 5789223 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 5789223 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile