RNA id: XM_026945207.2


Basic Information

Item Value
RNA id XM_026945207.2
length 1049
RNA type mRNA
GC content 0.51
exon number 15
gene id scpp5
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 813572 ~ 821979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCGCCTGCTCTCACTGTCTTCATCCAGAACCGTCCACCGGAGCAAGACGTTCTTCATCTGCAGGATCAGGTTCTCGTGTTACTCGTGTTCCTCTGAGACCATGTGGAGCGCCGTGTTCTGCCTCTCCTTCATCTCAGCGGTCTCTGCTGCACCGcTCTCCAAATTCTACAGTTTCCTGCCGCATTATGGAAACCCGATGCCATCAGGACCGTCCAACCAGGCTGCGAACGACATGTTCTCGCCATCACATCTCCAAGCTGGAATGACCGCGCCCATCAGCATGGAGATTTTGCTTCCACCAAGATTCCCGGGAACCGCAGCAGGAGGACAAGGATCTGGAACTGGGACGAACAGCATGTTCCCTGGTGTGCCATCGCATCTTCAGCCTGGAGTCAACGCTCCCATCAGCATAGAGctgtTTCATCCGGGTTTCCAGGGAGCTGCAGCAGGAGGACAAGGATCTGGAACTGCTTTTATTAAGTACTCTCTCCCCAAGGCTCCTGGCAGAAAGAGTGTAGAAATTtaTTATCCCTACAACTTCGGACAGGGCGAGgTGCTGCCAAACATGGTGCCGCAAATCCCCAATATTTTCCCCTTCAGTTACCCGCCACAGACCGGCCCTCAGCAGCAGCCACCCAGGCAGGCCGCTCCTCCGCAAGGCAACGATCAGCCCTTCGTCTTCAACTATccaccccagcagcagccaGCCAGGGCTAATGATCCTCAACAGCAGGTTCAACAGGACCCGCAAGTCCCAGCAGGCCAGCCGTAAAGAGGAAGaagtgctgctgtttttATGAGAGAGATGTTCCTACGACACAAGCAGAGCTTGGAGATATTTTGCTGATGTTTTAGTATGTAGCTGTAAAGGATGAAGCTCGAGTAATATTAGTTTTGTAGAGAAACCCATTTTTACATTGGGTAGATCTAAAACTGATCGTCACATACTGCAGAGAAAAACATACATCTAatgtcagaacacaccacacattTAATTCTTTAACTGACAGATTTATACCTTTATTCCTCTCTGATGTTGTTGGCTAA

Function

GO:

id name namespace
GO:0030900 forebrain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461982 lncRNA upstream 19237 787521 ~ 794335 (+) True G389524
TU461961 lncRNA upstream 72266 736859 ~ 741306 (+) True G389515
TU461946 lncRNA upstream 82407 612303 ~ 731165 (+) True G389506
TU461943 lncRNA upstream 154834 604419 ~ 658738 (+) True G389505
TU461762 lncRNA upstream 303841 444407 ~ 509731 (+) True G389441
XR_004577511.1 lncRNA downstream 116687 938666 ~ 939174 (+) True LOC117596382
TU461729 lncRNA downstream 117069 939048 ~ 950362 (+) False G389438
TU461721 lncRNA downstream 124141 946120 ~ 950362 (+) False G389438
TU461723 lncRNA downstream 127031 949010 ~ 950362 (+) False G389438
TU462012 lncRNA downstream 158444 980423 ~ 998703 (+) True G389542
XM_034301310.1 mRNA upstream 45812 764306 ~ 767760 (+) True odam
XM_034301314.1 mRNA upstream 50620 758772 ~ 762952 (+) True scpp9
XM_026945199.2 mRNA upstream 57913 751135 ~ 755659 (+) True si:dkey-22i16.9
XM_034301312.1 mRNA upstream 63677 746707 ~ 749895 (+) True LOC113545734
XM_026945202.2 mRNA upstream 85655 724127 ~ 727917 (+) True LOC113545725
XM_026945203.2 mRNA downstream 1902 823881 ~ 826736 (+) True enam
XM_034301309.1 mRNA downstream 1902 823881 ~ 826736 (+) False enam
XM_034301289.1 mRNA downstream 5860 827839 ~ 832209 (+) True cnga1a
XM_026945196.2 mRNA downstream 29354 851333 ~ 877393 (+) True tacr3a
XM_034301308.1 mRNA downstream 84902 906881 ~ 916289 (+) False bdh2
TU461983 other upstream 8356 804360 ~ 805216 (+) True G389525
TU461981 other upstream 13006 790488 ~ 800566 (+) False G389524
TU461975 other upstream 16243 790488 ~ 797329 (+) False G389524
TU461976 other upstream 16243 790488 ~ 797329 (+) False G389524
TU461974 other upstream 16243 793553 ~ 797329 (+) False G389524
TU461743 other downstream 112950 934929 ~ 950407 (+) False G389438
TU465523 other downstream 5404378 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 5404378 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 5793980 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 5793980 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile