RNA id: XM_026945278.2


Basic Information

Item Value
RNA id XM_026945278.2
length 3055
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC113545749
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 1873316 ~ 2185917 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCTGCATTGCTGATGCCTCATGGCCACGGACTGCCTCGGCTCCAGGTGTTCCTACGTTCTCTCGCGTTTTTGATGGAGTAGAGCCTGTCTCTTTCTCGGATCTCCTGCAGCTGTCAGGACCGAGATGTGGCTTGTGCTTTGGATCAGCTGGGACCGGCAGAGCGTCTCTCAGGATATCATCCTATAGATCCCAGGGAGAAACTTTTGCATCCAGCCTTGAGGCTGTCAAAAGAAATACCTGGCTTGTTCTTGTTTCTTGAATCCTAGTACCTTTAGGAGTTGCTGGCCACCAAGTACGGAGAGGTTCCTCGAGGCTTCCTTGTTCGCAAGTGTTATTACAGTCacctccgtgtgtgtgtgtgtggtgaggtgGGAAATTGAGCAAGCTGTAGGGAATAGACTCAGATTGCTCGTTCCAGCTCCAAGAGTGCCCTAATTTTGTGAAGGTTTTTTCCTCTTGCCTTTCTCGTTTTCCATCATGCTTGAAAGTGCTCTTATTCTTGCTGGAAAACTGTGGATTTTCTCTGACTGAGGAACAAGAAAAGGCTTCTCTTATCTAGCTTTGGGGTTATTCACACCGCTAGTTGCTGGTTGCTGGTCCTCTGTGGATTATcttgccattttcttttttttttttttttttttttgaaggtgtGTGTTCTTTTGCATACGGGTATATGAATGTGAGGAGCATGGGCCACCGGGAACGCTGAATCCCGAGTCTGTCCTGTTACACTCTCCCTCCTGTTTTCTCCTCTTGGGGGATGATGCCTGGGGGCTGGAGCACGGAGGCTCTTGTCTGGCCCTCGGCTGGCCGCATGGCCCTTTGCCTTGTGACCCTGACCCTTGGGGTGACATTGGGGTCTCATCATGCAAGGCAAGGCAAACATCACCACACCGTCCCGGCTGCCATCCACAGATTACCTGCTTCACTCCGTGCAGGACATGcgGGAACGACGTACATATTCGGGCGTGAAGGAGGTAAGATCACGTACACGTGGCCGCCCAACGACAGGCCGAGCACCAGAGCTGACAGACTGGCACTGGGCTTCAGCACCCAGCTTAAAGACGCCCTGCTCATCAGAGTGGACAGCTCATCCGGACTGGGAGACTATCTCAAACTGCACATTGAAAAGGGCCACGTGGCCGTGATCTTCAACGTGGGCACGGACGACATCAACATCGAGGAGAAGTCCAAGTTCGTGAACGATGGCAAGTACCACGTGGTGAAGTTCACCAGGAGCGGGGGTAATGCCACGCTGCAGGTGGATGACCTGCCAGTCATTGAGCGCTACCCCACAGGCAACATTGATAACGAACGACTGGCGATCGCTAGGCAGCGAATCCCATATCGACTCGGTCGAGTAGTTGACGAATGGCTACTCGACAAAGGTCGACAGCTCACCATTTTTAACAGCCAGACTACAATCCAGATCGGAGGCTGGGAGCGAGACCGGAGTCGCGCCTTCCAAGGCCAGATGTCGGGCCTCTATTACAATGGGCTCAAAGTGTTCAACATGGCCGTCGAGGGCAACCCAAACGTTCGCGTCGAGGGCAGCGTGAGGCTGGTGGGCGAAGcgccttcctcttcctcctcctcttcttcctcttcttcttcctcttctatCACGCCTCAGTCCAACGCCTCCACCTCCATCATGGAgaccacaaccaccaccaccagcagcaccacCACAGCCTCCAGCCGCCGAGTCAAGCAGACCACGCCCAGAGAGGCGCAGCAGACGACGGATGACCTGTTGGTGGCGTCTGCCGAGTGTCCGAGCGATGACGAGGATATCGACCCGTGTGAGCCGAGCTCAGCAAGCCCAACAGGGCCGGGTCTGAAGGGGTACCCCGACCCGGTGGAGGTGGTCCGCGAGTCCAGCAGCACCACGGGTATGGTGGTGGGCATCGTGGCGGCAGCCGCTCTGTGCATCCTCATTCTTCTTTATGCCATGTACAAATACCGCAACCGAGACGAGGGCTCGTATCGCGTGGACGAGAGCCGCAACTACATCAGCAACTCAGCGCAGTCCAACGGCACCGTCCTAAAGGAGAAACCAGCCAACGTTGCCAAGAGCACCACCAAGACCAAGAAAAACAAGGACAAGGAGTACTATGTTTGATCGCTCTTTCACTGGACGTGCTCTAGAACCATTTTTTGAGGACTTTACAGACttctggatattttttgttttgttttgttttgtttttcctcgctctctctctctgaaagaaTAATACAAAACCATATCCTGTGTATAATAGCGagaactggggaaaaaaaactgaaaactgctttgaaaaaaaaaatgtagtcgGTTTATCTAAAATATTGCATTACACTGCAGATTGAAGGTTTCACTCATGTCCGGATGGCAGGCACAGGAGGACGGTACTGGCGTGGCTTCAGCTGGACAAGAGGATGTCTGAGGAAAACATAGCTGATTAAATACCCGATAATTAACTGCAAAGCAGATTATCAATACAAAACCCATCTGCACCTCAAGCAGCCGGCCAACAAAATGCTGCGCTTATGGGTAAGAGAGACGGCACCATCCGTTAATGTGTCGATTCTGCCAGGATGTTTTTCCACAACAAAAGTCATAAAATGGGCAAATATGAAGCATCCATATCTAAGCTTGTGATTGTTCTTTGCACCAAGAGAGACCAGCAGAGACTCTCATGAGCCTCCCAAAATCTAACAAGGGAGCAAACTGCTGAAAGCCTACCGGCATGAGGAATCCAAAAGCAATCTCGAAAGCAATCTCAAGGCCTTACGTTCTCAGCTGGAGGAAACCTTAAGGCCATAAAACAGTGGATACAAAAAAAGCGACCGTTCGAGAAACTCTTGATGCACGCAACAGTATCTTATTACATATGTTTATACACCCACATCTAAATGTGCTCTCTGGACTGTGACAGTGGTGTTTTATAGCCTGTTGTATAGACGCCAAATTATACCTGCTCCtcgatcatgttttttttttcctttttgtttcagTAATAAAAAGTTCCAaaaacgggaaaaaaaaaaagaaaaagtaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU462678 lncRNA upstream 82849 1944549 ~ 1945455 (+) True G390077
TU462598 lncRNA upstream 171403 1856490 ~ 1856901 (+) True G390023
TU462594 lncRNA upstream 174135 1842073 ~ 1854169 (+) True G390020
TU462593 lncRNA upstream 177730 1836764 ~ 1850574 (+) True G390019
TU462557 lncRNA upstream 267392 1754717 ~ 1760912 (+) True G389985
TU463037 lncRNA downstream 170416 2356333 ~ 2356794 (+) True G390411
TU463039 lncRNA downstream 178637 2364554 ~ 2368266 (+) False LOC113545784
TU463040 lncRNA downstream 178637 2364554 ~ 2368266 (+) False LOC113545784
TU463087 lncRNA downstream 320148 2506065 ~ 2506498 (+) True G390456
XR_004577500.1 lncRNA downstream 950711 3136628 ~ 3171123 (+) True LOC117596362
XM_026945308.2 mRNA upstream 277542 1715265 ~ 1750762 (+) True rnf24
XM_026945307.2 mRNA upstream 277542 1715267 ~ 1750762 (+) False rnf24
XM_026945165.2 mRNA upstream 395532 1619297 ~ 1632772 (+) True adra1d
XM_026945346.2 mRNA upstream 708228 1315659 ~ 1320076 (+) True lrrtm1
XM_034301324.1 mRNA upstream 1048978 961694 ~ 979326 (+) True suclg1
XM_026945414.2 mRNA downstream 134425 2320342 ~ 2335887 (+) False LOC113545799
XM_026945415.2 mRNA downstream 134425 2320342 ~ 2335887 (+) False LOC113545799
XM_034301213.1 mRNA downstream 135265 2321182 ~ 2335887 (+) True LOC113545799
XM_034301212.1 mRNA downstream 135265 2321182 ~ 2335887 (+) False LOC113545799
XM_026945373.2 mRNA downstream 180879 2366796 ~ 2377048 (+) False LOC113545784
TU461743 other upstream 1077897 934929 ~ 950407 (+) False G389438
TU461983 other upstream 1223088 804360 ~ 805216 (+) True G389525
TU461981 other upstream 1227738 790488 ~ 800566 (+) False G389524
TU465523 other downstream 4040440 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 4040440 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 4430042 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 4430042 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 4430042 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile