RNA id: XM_034301147.1


Basic Information

Item Value
RNA id XM_034301147.1
length 7078
RNA type mRNA
GC content 0.49
exon number 48
gene id LOC113545751
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 3293191 ~ 3333177 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTTCTCGCGCTGTTACTGACCATCTCACATCGCCCATCTTTAAAACCAGTCCCGTTAACCGGAGAGCCGCGTCCCGTCCCGTACTGATATAACGCCTTATAACGGATGAACTCTCGGgtgTCTTTTTAAGTGAGAAAATCAACAAAGagtgaagacaaaaaaaagatgattgaAACAATTGACACGCAGCGTTGTCTGCAGGCAGTGGAACGACTGCAGGCTCGTCTGAAGGAGAGAGGAGGTGACGTGCCCTCTGATGAGAAACTGAACCTGCTTAAATCTGTCCTGCAAAGCCCTCTGTTCCACCAGATCCTCGCCCTCCAGAAATCAGTACAGCATCTTAAGGAACAGCCTTCATGTGTAAACTCAGATTATAATGGAGGATATGTTGACTCGGCTCAGATTAATGGGCGGACCTCATCAGAGGAGCACGAGCGCATCATTCGCACCATGgctcagGGTCGGTACGTGACTCATATTGACTTGGTGAAGCCGGTATCAGGAGGCCTGGGCTTTAGCGTGGTAGGACTGCGAAATGAGAACCAAGGAGAACTTGGCATTTTCGTACAGGAAATCCAGACAGGGAGCGTTGCATACTGTGATGGGAAGCTGAAGGAAGGAGATCAGATCCTGGCGATAAATGGACAGCCACTGGACCAGAACATCAGCCATCAGCAGGCAATTGCGCTGCTGCAAAGAGCATCTGAGCATGTACAGATTACGGTTGCCAGAGGGGCAATTCCTCAGCTTTCCAGCCCAGTGGTGTCCAGAACACCTAGTGCTGCTAGTACACTGTCTGCACATTCAAGTGGGAATCACTGGACGCAGATGGAGACTATAGAGCTAGTCAATGACGGCACTGGTCTGGGTTTTGGCATCGTCGGGGGTAAAACTACTGGTGTCATTGTCAAGACCATTCTACCTGGTGGTATCGCTGATAAGGATGGTCGCTTGCGCAGTGGTGATCACATCCTGCGTATCGGGGACACTGACCTGTACGGTTTGGGCAGTGAGCAGGTTGCTCAGGTGCTGCGGCAGTGTGGCAACAGAGTCAAACTTCTCATCACCAGAGCAACCGTGGATGATGCCTCCCCTGCGCCTGTAGCCCTGCCAACAGTTACTGAGCAACAGGACCATGAAGAAGAGGAGCAGGATGCATTCGATGTAAGTCTGACGAAGAACGCTCAGGGTCTCGGCATCACCATTGCAGGATACATCGGAGACAAGAACTCTGAGGCCTCTGGGATATTTGTGAAGAGCATCACTGCAGGAAGTACTGTGGAACAAGATGGCCGTATCCATGTTGGAGATCAGATCATAGCTGTGGACGGAGTGAACATACAGAGCTACACCAATCAGCAGGCAGTGGAGCTCTTACGCCACACCGGTCAAACGGTCCACCTCAAACTTGTCCGCCACGGCTTTAGACCAGAAGACACTCTCCTGCCGATCATACCTGTGACCACCGAGGCTAAACCAAGACAGGAGTGTGTCGCCACAGACAGCATGGATGATCCTGTGGAAGCATCCAGACATGTAGCTGCTGCTGATGTTTTGCCATGCACGCCTGAACAAAAGAAAGGCATCAAACTGAATAGcgatgaggaagaggagctgAGGAAGAAATGGCAAAATGCTCTCGGTCCTAGTAATGAAGTTATTgtggtacAGGTAGAGAAATTCAGTGAGAGCAGTGGACTGGGGATCAGTTTGGAAGCGAGTGCTGGTCACCACTACATATGCTCAGTTTTACCCGAGGGACCTGTAGGACGTTCAGGAAAGCTCTACAGTGGAGATGAACTACTGGAGgTGAACGGTATACCTCTTAGAGGTGAGACACATAAGGAAGTGGTGAGCATTCTGAAGGAGCtgcccgtgtgtgtgtacatggccTGCTGTAGGCCCGCCCCTTTGCCCTCGACTGACAGTCAAACCGGCCAGCCACGGCTGGAAGAAGTGGCTATGGAGTCGACAGAAAAGGACCTTGACGATGATGAGGACTTCCTTGTGCCTGGCGATTCAGAGACGAGCCTAAGAGATCTCGTGCAAGAAGAGACTGTGGGAACTTCATTGGCAATGTGGGAGTCAGAGATCCAGGACATTGAGCTGGAGAAAGGAGAACGTGGACTGGGTTTTAGCATCCTAGACTACCAGgacCCTATGGACCCAGCTAAGACTGTGATCGTGATCCGATCTCTGGTGCCTGAAGGTGTGGCTGAAGTGGACGGACGTTTGTTGCCAGGAGACCGGCTGATGTATGTCAACAGCATCAACCTCGAGAGTGCTAGTCTGGAGGAGGCAGTTCAGGCACTGAAGGGGGCCAGCTTAGGCACCGTCCACATTGGAGTAGCCAAACCACTGCCTACTCCCTCCTCTATATTCTCGGCTCTGTtgtggatggagagagatgaggaggaggaggaggaggaggaagaagtcTTATTCCGCGCTGAGCCAGTACTGATTGACACTAGCGATGTGGACTTGTCAGACGACAAGTTCGATCGTCATTACGACGCTGAGGAAGACGACACGTTTCAGGCGTCCATGATCGCCCTTCACGGAAGCACCTGCAGTGCAGATCTCACCTATCAGATGGCCGTGCAAGCCTCCACCCCTCAGAGAAATGCTCACCTGGATTCGTTCATGGACTATCCTTTTATGACGGCATCTGAAATCGGAGAGCCATTTTCTCCTGAGGAGAAGGGAGCATCTGTAAGGCTTGAAGCAGGGACCGGAAGACTTGGCTCCACCCACTCCAGTCTGATTATGGAAAATGATTTAGAGAGAATGAACTCCATGGACCCACTGATGTCAAAAGCTGGGATTTGTAGAGCAAACACTGCTTCCACTTGTAAAGAAGAGAAGCTTGCAACAACATTATATAGAGAGATGGGACCAATCATGCCAGAGATCCAAGGGCGAGTGCATGAAGGTGGTTATGTTCGTGCTTCTCAAGAGGAGGAAGATGATTTCCCAATGGATAAAACTCAAGAGGAAGAAACAGATCAACAAGAAATGACTCCAGGGAGCAATTTTGAGAGGACCATCACTGTTGTCAAGGGCAACTCAAGTTTAgGTATGACAGTGAGCGCAGTGAAGGATGGCGTGGGTATGCTGATCCGCAGCATCATTCACGGCGGGGCCATAAGCAGAGATGGACGTTTAGGTGTTGGAGATCTCATTCTCGCCATCAACGGCGAAGCAACCGGGAACCTGACCAACGCACAGGCACGCGCCATGCTGCGCAGACACTCACTCATTGGATCTGACATGGGATCTTCAGTTGCTCCGGAAGAGGAGCTCTGCCCCTTTTATATCATTACCTATGTACCAGCGGAGTATTTAGAGGAATACAAGGCTATTAAGCAGGCCAAGGATAATACCTTTGCTGTGGATGCATCAAGCACACCAAGGTCTGTAGCAGAGCTTCCTGAGAGGGAGGATGGTGAAGGGGAGGAGAGCGAACTACAGACAGCAAACTTCAACAACTGGAACCAACCAAGGAAggtgGAGCTCTACAGGGAAGCAGGAAAATCTCTGGGTATCAGCATCGTTGGTGGGCGAGGCATGGGCAGTCGCCTGAGCAACGGGGAAGTGATGCGGGGCATCTTCATCAAGCACATCCTGGAAGACAGCCCTGCGGGACGCAATGGAACTCTAAAAACCGGAGACAGAATagtacaggtggatGGTGTAGATCTGCGAGATGCCAGTCATGAGCAGGCTGTAGACGCCATTCGTAAAGCTGGCAaccctgttgtgtttctggTGCAGAGCATTATCAACAGGCCCAGGAAGCCACCTGTTCCCTTTCTGCAGCTAAACAGCAGCACTAATGCACCAGGCCGCTTTATAAACACCCTACCGCAGACATCGGCAGCAGACTCCGTCGAGGGCAGAACAGCGCGGGTCTCAAACCCCAGCAACAAGCTGAATCGAGAGCCAGGGAAAATTTCCCCGACGATGCCGTTCCTCTCAGTGCCACGCATAGGCGAGACGGACACAGACACGCTGACCGAGGTCCCTGATCATCTCACTCTTTCTCATGACACggtggaggaagaggaagatgagTTTGGCTACACTTGGAAAAAGGTGGTCGAGCGTTATGGGAGTCTGCCCGGTGTGTTGCATATGATTGAGCTGGAGAAGGGAAGAAGTGGTTTAGGCCTGAGTCTGGCAGGGAACAGGGATCGCTCAAGAATGAGTGTCTTCGTAGTAGGCATCGATCCCAATGGAGCAGCTGGGAGAGATGGACGCATCATTGTAGGAGATGAGCTGCTGGAGATCAATGGTCAGATTCTGTATGGTCGCTCCCATCAAAATGCCTCATCCATCATCAAGAGCGCCCCATCCAAAGTCAAAATCATATTCATTAGAAACACGGACTCTCTCACTCAGTTGGCTGTCATCCCAGTGAAAGAATTCGGAGATGTCCTGGACACACAGCCAGAGgaagaggaaggacTGGTGTTTAGTGAGGAGGACAAGAATGGCATGATCATTCAGGATGTTAAAGAAGATGGAGCAGCCATGAAGGTACAGgAGAGTAGTACACAACCAGGAGATAGACTGATGGTAGTAGATAATGAAGTGCCACAGGACCTCTCTGTGGAGAAGGTAACGTCACTAGTGAGCAAAGCGAAGAGCTCAGAGAAGCTCACTCTCTGTACAGATATCCACACCCCAATATCAACCTCATCCAATCAGACACGGAGACTATCAGACCCAGCGGTGGTCACCAGCATGCCTCTGTCCTTGACACCACCAGAAATGGAATCAATCAAGAGTTCCAGCAGATCATCCACCCCTGCGACCTTGGCATCCGACCCTGTGACCTGCCCCATAATCCCTGGTTGTGAGACTACCATTGATATCTCTAAAGGAAGGACAGGACTCGGCCTCAGCATTGTGGGTGGCTGTGACACACTGCTGGGCGCTATAATAATTCATGAGGTGTATGAGGAAGGTGCTGCTGCTAAAGATGGAAGACTCTGGGCAGGAGATCAGATCTTAGAGGTGAACGGTATTGACCTGCGCACAGCGTCCCATGACGAAGCAATAAACGTGTTGAGGCAGACACCACAGCGAGTGCGTCTGACTGTGTTCCGTGATGAAGCACAGTACAAGGAGGAGGAGCTCTGGGATGTGCTGTCAGTGGAGCTGCAGAAGAAACCAGGCCAAGGCCTCGGACTCAGTATCGTCGGAAGAAGGAATGAtacaggtgtgtttgtgtctgacaTTGTGAAGGGAGGCATTGTTGAGAGTGATGGCCGGCTCTTGCAGGGAGATCAGATTTTGTCTGTTAACGGTGAGGACGTACGGACAGCAACACAGGAGTCTGTTGCCGCCCTGCTGAAGTGCTGTGTTGGTCCAATCAATTTGGAGGTGGGTCGCTTCAAGGCAGGGCCGTTCCACTCAGAGAGACGCCTGTCTCAGGGCAGTCAGttaagtGAAAGTGGAAGCTGTAAAGCCAGCCAGCTCTCTTTCACTGGTTCTGGCAGATCACAAGAAGACTTTGAGAACTGCCACAGAAGTCACGAATcACTGGACCAGGACAGCCGAACTGTAGAGCTCTCCAAGggtccATCCGAGTCCCTGGGGATAAGTATAGCAGGTGGAGTGGGTAGTCCTCTGGGTGATGTGCCCATCTTCATTGCCATGATGAACCCAGCTGGTTTGGCTGCACAGACACAGAAACTCagaGTTGGTGATAGGATCATATCAATCTGTGACACATCTACTGAAGGCATGGCCCACAGCCAAGCTGTATCACTGCTGAAAAACACCACAGGAACCATACGCCTGCAGGTTGTCGGAGGTGACACTACAGTAACAGGTCCTTCTCTGGATCAAACATCTGGTCTCACCAGCAGCAGCATCTTCCATGATGACCTGGGTCCTCCTCAGTGTAAGACGATTAGTCTGGAGAGAGGGCCAGACGGCTTGGGCTTCAGTATAGTGGGAGGGTTCGGTAGTCCCCATGGCGACCTGCCCATCTATGTAAAAACGGTGTTTGGAAAGggtgcaGCTGCAGAGGATGGGCGTCTAAAGCGTGGGGATCAGATAGTTGCAGTCAACGGTCAGAGTTTAGAGGGAGTCACGCATGAGGAGGCTGTcggtattttaaaaaaaaccaaagggACCATCACGCTCACCATACTCTCATAGGACACTAAATTATACATCATCATATTAAAAAACACTGGCTTATGTTACACACTGTGACCTTTTAAcattaatactgtaaatatccagtactgaaacatttttttattatgatcaTCCgtcattatttattcttttactaATACAACAGATGCTGTTTCAAATTCTTTACCTTCACACTGTTGGGAGATGATTAATGATGAATAATGTATCTACTGTTTTAGCTTCATGCATCAGTAGGTAGTGGGAGTTATGAACATATGAATTAAACTTTGGGGTGCAATTAATCCGAGCATATAGAAAATACCATACAGCAGCTACTGAATAGAGTCATGTGACTATTTTTATGTAATGTCGTTAGCTATATAAAATGTAGTTAGCTTTAGCTACTTTTTAAAGCAGATTCTACTTTGGCAGCTTTGCCTGATCTACTTTAGAGTTTTTATTAGACAGCAGGTTTTGGCAGTTTACCCAGCACTGCTTTCTTTCACTTCTTGAATAACACTTCAGGCAACAGTTTTAGTCCCagactgcaaaaaaacaaaacaacctaGACTACATTCTTACAGCTAGTATTACTGATCGTACAATTCATGTGGACAACTGATTAGCCATCGATACTGTGCGTTATTTATACAACTGGGACTGTGAGACATAAATGTAAGTATTAGAGAGAAGGAATCTAACCAGCACGCAATAGCGTTTTAAATTTGTTAGTGATACAGAGTTCTAGCTGTTAATACACACTGTGTCTTTGTGTAGAgctatttacagtatttttggATTGGATTTTGAAATGGAAGGAACATTGTTTTTCAGTATATTATGTATCTATCTGTAAGCATTTTAGTCAATGTTACTAATTTAGAGAGATTACACACAAGcaataaacatttctaaaacCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577500.1 lncRNA upstream 122068 3136628 ~ 3171123 (+) True LOC117596362
TU463087 lncRNA upstream 786693 2506065 ~ 2506498 (+) True G390456
TU463039 lncRNA upstream 924925 2364554 ~ 2368266 (+) False LOC113545784
TU463040 lncRNA upstream 924925 2364554 ~ 2368266 (+) False LOC113545784
TU463037 lncRNA upstream 936397 2356333 ~ 2356794 (+) True G390411
TU463627 lncRNA downstream 66004 3399181 ~ 3400825 (+) False LOC113545782
TU463846 lncRNA downstream 67751 3400928 ~ 3401783 (+) True G391143
XR_003404650.2 lncRNA downstream 815858 4149035 ~ 4175902 (+) False LOC113545714
XR_004577481.1 lncRNA downstream 829466 4162643 ~ 4175902 (+) False LOC113545714
TU464077 lncRNA downstream 833269 4166446 ~ 4172011 (+) True LOC113545714
XM_026945363.2 mRNA upstream 854309 2432863 ~ 2438882 (+) True zgc:64201
XM_034301379.1 mRNA upstream 863201 2415080 ~ 2429990 (+) True ppp1r21
XM_026945389.2 mRNA upstream 880076 2388846 ~ 2413115 (+) False rtn4b
XM_026945367.2 mRNA downstream 26200 3359377 ~ 3400550 (+) True LOC113545782
XM_026945368.2 mRNA downstream 26200 3359377 ~ 3397444 (+) False LOC113545782
XM_034301316.1 mRNA downstream 26200 3359377 ~ 3397183 (+) False LOC113545782
XM_026945369.2 mRNA downstream 27419 3360596 ~ 3397183 (+) False LOC113545782
XM_026945170.2 mRNA downstream 223176 3556353 ~ 4144835 (+) False nrxn2b
TU461743 other upstream 2342784 934929 ~ 950407 (+) False G389438
TU461983 other upstream 2487975 804360 ~ 805216 (+) True G389525
TU461981 other upstream 2492625 790488 ~ 800566 (+) False G389524
TU465523 other downstream 2893180 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 2893180 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 3282782 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 3282782 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 3282782 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile