RNA id: XM_034301088.1


Basic Information

Item Value
RNA id XM_034301088.1
length 4038
RNA type mRNA
GC content 0.44
exon number 14
gene id alpk1
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5428037 ~ 5436881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAACTGAATGCTGCTGACGTTATGAACACTCTGGAGTTAGCGGCGCAGCTGGAGGAGTGTCTCCACCTGGCGAGGAGAGACATCACTGCAGCGGACAAGGAGATGTTCAAGAATGCCACAGAATGTGTTGAAGATGGAGTCAGGgggaacaaaacaaacaatgtggaccaccaacatccTACCAATCAGCAGGATCAGCATCAACCAGAATcactaatgcacctttaaaacagAGCATGTATGTGATATATGATTTACCAGATATCGGACTATAGGAACTAACGTTGTTAGAGGCATGCTGTCTGCTGAAGTGAACACTCTCCTGCAGGAGGCAGTGAACATGAAGTGGCCATTTGTTGAGGAAAAATGGCAGTACAAGCGTTCAGTGGCATCAGAAGACAAAGTGAATACTACAGATCTCATTGGCAGACATCTACCTCAGCTAATGGTCTTCCTCAGAGCATCCATCATGGCTGCCGAGTCAGCATGGGCGATGTCCGTCATATTTCTGCTGGACCGCTTTCTCTACTGGATAgacagctctcacacactgctgaagATTGCTAAAGCACTACATATGCGCTACCCAGAAACCCCGGTCGCCCCTCAGATCATCATCCGGCAGGCCAGAGTCTACCTCAACACTGGTAAACTACAGAAAGCAGAGTACATACTGAGCAGTCTGATAAATAACAATGGAGCAACTGGATGTTGGAAATACCAGCGGGATTGCGATCGGGTCCTTGTGCAGTCAGTCAGCGTGCAAGTTCGGGGACAGGTGCTACAAAAGCTAGGTCTGTGGCTGGAGGCAGCAGAACTCATCTGGGCTTCACTTATCGGTTTCCATGTGCTGCCTCTTCCTGATAAAAAGGGTATTGGAACATCTCTTGGGCTTCTAGCTAACATCCTGATCTCTATGAACGATAAAGACTTTGCTACATTTCAGAAGAAGCCTCATATCGACCTGGGGTTTTTGGGAGACTGTAATCATCGACTGCTCTGCGCAGCTCAGGCTGCCAAAATGGCCGCCGTGTACAGTCAGTTCGGCTCTCTGTATGTATTTACCCACATGGTTACTCAAGGAACATGTCTCCTGTCCTACAGTTTTTCCAAAGACTGTCCTGCTCCAGCTAAGCGTACATATCTCGCTTTGGCTAAGGAAGCCTTTGAGAATGGTTTGCTAACGAAGAAAGACGATGAAGTGGTGACTAGTCAACAGGaactacacacactcctcaaagCAGCTTACTGCTTAGCCACAACCAACAAATGGATGTTTGGACCAAGTGAACAGGTTAACGCGGCTGTTCAGGCTTGCCAGgaagctgtgggttttttttattcttactgCTTTAAAGACAACTCTGATAAAAACGCACTTTCTTCTGAAGTCATGGCGAAGCTACAGCATGTTAAGGCGCTTCTCAAAATGAAGCCCTTCAAAAATTCTGACCCTCGTTCGTTCATTCCTGATAGTTATCGTGCCATTGAGGACAGACCAGTCCCGTTCACCATTGATGATTTTGCAAAGGTCATGGAATGTTTTCAGAAGCACCACAAATCAGTGTGTGAAGCTTTTTCGGTGCAGAAATGTGGAGGAAACCATCAAGACGCAAGTCATGCTAACTGCATCACAGCTGTCCAAACGCGAACTGAGTCATTTGCAACAGAATGTCATACTATAAGCCATAAATCGAGTGAATGTCAGCTGGGGAtcgaaaacaaaaacattttggccAAGCCGGAAATCTCAGATCAGCTCGCAGAAACCGTCTCTGATACAAAGGACAGCGAGGAAAAGAAGCCAGGTGAAAAAGTCCAAAAAGCTAAAATTTCAAGAATGTCTGGAGGAAGCAGCAGTTTAGGATCTTCGTGGACAAGTCTGTCTGATAATAGTGGGAATTCACCAGTTCTAGTCGATCCTTTCTGTTGCACAGAAGTAGATGACGATGATGGTGTTGACAACAAGCAGAACAGACATAATGATATTGAAGGCAAACGTGCCAAATCTGCTAATGCTAGCAATCAAACCAGAAGAGATTTTTCCTTCCAAGCTAGCACAAGTCATTCAAAGGGGAACATGCAAGAGCTTTGCACCACTTTGGGAAGTGAAGACAACAGTGATGGAGGTACAGGAGATAGCATGTCTAATGCTAGCCATGGAGCCTGCACAGAGCTTTCCTTTCTAGCTAGTGCTAGTCAACAGCAGTCAAATCAAGAACTTTTCACCACATTGGGAAGTGAAGACTACTGTCAAATCACCAACAATTTTGATgggaaagacaaaaagacaagaaCTTCATCAGGGTCCATTAGTAGCTTGGGCTCTTCATGGCAAAGTATCTCATTCTCCAAATCACCTCACATTGGAGGTTTTACCGAGGTCTTGGAGAACAAGCAAGCAGTCGATCAAAACTGTGACACTTTACCAAGCCCCAGTAGTTCTTTTGAGTCTCTAAACCTCAATTCTTCAGCATCATCAATTCAAAAAGAACACTTTAGTCCTTCCTACCAGACAGGAAATGATTCAAGCAAAGCCCAGACTGGAAGTTTCAATAACAAACAGTCATTACCATCTACTGAGTTTGACTCATTTGAATTTTTGCAGGTCGATCATTCTGAAGCAACACAAGGAATCACAACTCCAGCGAACAAACATATGGAAGGCAACATAAAGGTTTCTCCTCCTGATGAAATTAAAGTTGATGCCTACAAACAGTCTTTTATGTCTGGAAAAATGACAGAGACTGCAGATAGTGATCAGTGTTTGTCCAACGACAGCCTTTTTTCCAATATGAACTGTCGCAACGGCTGTTTTCAGGGTTGCAAAATGGGAAGTGTAGTTTTGACAGAGCAGGACTACAGATCCCTCCTCTCAGGAGTGTGCCAAGGTTGCCTACTGAGGAGGCTTCCAGACAAACCATTTAAACTCAGCCATTACAACAAAGCTTATAgTGCACTTGTGTTAAAATACTCCAAGACTACAGACTCGTGGACCGCCTGTGAAACGAATGTGTATGTGGGTGAAGTGCTAAAGATGGATGTTGAAGGAAGACAGAGACAGGCGTTCAGAGTTCAGTATCTACACCAGGAGATACTGCTGGGCAGTTATGTAGGAAAGGAGTATTTGAAAGAAAGGAAGATTGACACACACCTGGGAGATGTGGAAAGACAGATGACGGCTCAGTATTATGTCATGGAGTTCAACAAGCGCCTTTATGAGAACAACATCACCACACAGATCTTCTACCTTCCCTCTGAGCTACTGCTGctcctggaGTCTGACACCATCTTGGCCTGTATTTCAGTGGAGCCATACATGCTGGGGGAATTTGTGAAACTCACCAACAACACAACGAAAATCAACAACCTTCATTCGACCACAGAATACGGCATTGCGTTCGGACACTTCACTTATGAGTTCTCCAACGGGCAAGAGGTGGTGGTAGACCTGCAAGGCTGGATGACAGCAAATGGGAAAGGACTGATGTATCTTACAGATCCTCAGATCCACACGCTCAGGAAGCCCAAATCTGTCAATAACTTCCATCACAACGGTATCAGGAAGTTCCTACAGGATCAGCATGGAAAGCACTGCAACTCCATCTGTACGAgggctgcactacacacactccaacTACAGAGTGAAAATTAGCATGATAATAAACATTACTGAGTTACTGACAGTCCAAATGTTACAGATTTTATagaatatatcacaatatctgcTTACAGTTTCATGTTTTCAAAATAGacaacattaaaaagaaataactgcacatagatagatagatagatagatagatagatagatagatagatagaaacacTGCCTTCCATCACACCACCTACAAATGACAGGGTACTGTGTAATCtcttaaagtatttttttttacacagtgtgttctttctgttttctctgtcaGTTCTCTCATATACAGTAGGTTTTGATTTCTGATGTATTTGATGACTacagtctcagtgtgtgtgtgtgtgtgtgtgtgtgtttttttaagagatttaaataaatcatgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464420 lncRNA upstream 24436 5404521 ~ 5404752 (+) True G391612
TU464372 lncRNA upstream 52391 5372041 ~ 5376797 (+) True G391574
XR_004577518.1 lncRNA upstream 243531 5176090 ~ 5185657 (+) True LOC117596387
XR_004577517.1 lncRNA upstream 272481 5096248 ~ 5156707 (+) True LOC117596386
XR_004577465.1 lncRNA upstream 354782 5070934 ~ 5074406 (+) False LOC117596306
TU464377 lncRNA downstream 49595 5486476 ~ 5489315 (+) True G391576
TU464378 lncRNA downstream 49595 5486476 ~ 5489315 (+) False G391576
TU464379 lncRNA downstream 49595 5486476 ~ 5489315 (+) False G391576
TU464380 lncRNA downstream 49595 5486476 ~ 5489315 (+) False G391576
TU464390 lncRNA downstream 94957 5531838 ~ 5534270 (+) True G391585
XM_026945297.2 mRNA upstream 10098 5413890 ~ 5419090 (+) True LOC113545754
XM_026945385.2 mRNA upstream 59690 5367444 ~ 5369498 (+) True LOC113545788
XM_026945370.2 mRNA upstream 197749 5187559 ~ 5231439 (+) True LOC113545783
XM_026945168.2 mRNA upstream 350279 5074892 ~ 5078909 (+) True LOC113545709
XM_026945223.2 mRNA upstream 572214 4701493 ~ 4856974 (+) False LOC113545745
XM_026945167.2 mRNA downstream 536 5437417 ~ 5442725 (+) True epdl1
XM_034301335.1 mRNA downstream 153019 5589900 ~ 5593569 (+) True LOC113544404
XM_034301336.1 mRNA downstream 153019 5589900 ~ 5593569 (+) False LOC113544404
XM_026943206.2 mRNA downstream 169441 5606322 ~ 5611615 (+) True si:cabz01076231.1
XM_026943207.2 mRNA downstream 170049 5606930 ~ 5611615 (+) False si:cabz01076231.1
TU461743 other upstream 4478781 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4623972 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4628622 790488 ~ 800566 (+) False G389524
TU465523 other downstream 789476 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 789476 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 1179078 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 1179078 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 1179078 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile