RNA id: XM_026945297.2


Basic Information

Item Value
RNA id XM_026945297.2
length 1866
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC113545754
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5413890 ~ 5419090 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTGACTGCTGAGTCAGTTAAACTGTAGTACAGAGGCGAGAATGGTcagagagcaatgcagcagccaaaagaaactggacagctgaaaaaCTTCTCTTAGCTACTCAGGATGGACAGAACACTGTCGTGCTAATCATGGCTACTCCAGACCAGGATCAGGATCAAGGTAGCTAGACTCAGTTAGAGCTCTAAGTCAAAGGCCAAAGGTGGTGTCCCAAACTAGGAGGATCAggattgtgtgtgagtgtgagcgaTGGAGAGAGAACACCACTCCCATCTCAGAAGTAAGCCAGAAGTAGTGACCATCCCAGCTCTATACCGCGTGGCCCTGTGTGGTGGTACCCATGGCAACGAGCTGGCGGGGGTTTACCTGCTGCGCCAGAGCATGAGGAGGAAGCGGAAGGGTAGCATGGTGGATCCGGTTACTATGGTAACGGTGATGACGAACCCGCGCGCTGTGCAGCAGTGTGTACGTTACACGGAGATGGACCTCAACCgctgcttcacacacactacactgagTGCCCCGGTCTCTGATGTCACCCCGTATGAGGTTGTTCGCGCTCAGGAGCTGAATGCTCTGCTTGGTCCTAAAGGCAGCTCTGCAGCGGTGGATCTGCTCTGTGATCTTCACAGCAGCACTGCGAACGTGGGCCTCTGCCTCATCACTCATTCCGACAGTGACTGGATCTGCCTGCACATCTGTAAACACCTGCAGAGGGAGCTGGCCACCATTCCAGTGCGGTATGTCCATTACGATGTTCCTAAGAGTGAGGCTTACACATTGCACTCTGTTGGGAAACATGGCTTTGCGATGGAGGTTGGTCCTCAGCCACATGGTGTGATCAGAGCCAACGTTTTTACTGCCATGCAGGAAGCTGTTCATCTCACACTTGAATGGGTTCGTCTATTCAACTCAGGGACCCAGTTTGAGGGCGGCTCAGTGGATGTTTATACGATGGTGGAGAACATAAAATACCCTCAcgatcctcacacacacaccatcacagcTGCTGTGCATCCAGAACTacagGATAGAGATTTCTGTCTCCTGCACCCGGGTGACCccatcttcctctctttctccgGAGAGACTCTGAGGTACAAAGGGAAAGAGGCACTATATCCTTTCTTCATCAACGAGTGTGCGTTCTATGAGATGGGTGTCGCTCTGTCCCTTGTGAGGAGAAGGAAGGTGGAGATTCCAGCCATCCAGTGCAGCAGAACGTGAAGGACAGGCTCCAGAATGAAAGGGAGATACAGAGACTCCAGTGTGATACAGACTGGTCTTCTTAAATATGTCCTTGAAGATTTTCAATCGTGCCACAACCCATTACTACTCCATACCAAAAACTTGAACCTCAAAACCTCTACTCTAACCAGAACTCCAACACCAACCTCTATCCTCAACTCCTAGCCCCTTACCCCTAAACAAGCCCTCTAACCATGATACACCACTTATCTAACTAGAATGCTGAAGTCTTAACATGTTTATCTAATCATGTCAATGACGGGAATCACACATTGTTTAAATGCCTGGAATTTCCAATGAAGACCCTTATTGAGTGGAGAAGCAGCTTCAGTCTATACCTTCATATGGTGAGGTAGTAGCTTGCCACTTAAAGTGCCCAAGGAATAAAAATTGTTGTTTCAGAACTTTCTCAGCACTTTGTACAAGTCTTTTGGTGTTACTGACATCTGAATgcaagaatatttttaaaaatgtcagaaattttTGTTGTAGATACTTATTTCTGTAGAAAAAATGTCTAAGTTCAAGGTTGGGGTTTTCTCTAGAATTCTGCCAGTTATTCTGAATCTTGGAAATAAGTCATTCACCCCAACATGTCttgtttcaaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464420 lncRNA upstream 9138 5404521 ~ 5404752 (+) True G391612
TU464372 lncRNA upstream 37093 5372041 ~ 5376797 (+) True G391574
XR_004577518.1 lncRNA upstream 228233 5176090 ~ 5185657 (+) True LOC117596387
XR_004577517.1 lncRNA upstream 257183 5096248 ~ 5156707 (+) True LOC117596386
XR_004577464.1 lncRNA upstream 339484 4864296 ~ 5074406 (+) False LOC117596306
TU464377 lncRNA downstream 67386 5486476 ~ 5489315 (+) True G391576
TU464378 lncRNA downstream 67386 5486476 ~ 5489315 (+) False G391576
TU464379 lncRNA downstream 67386 5486476 ~ 5489315 (+) False G391576
TU464380 lncRNA downstream 67386 5486476 ~ 5489315 (+) False G391576
TU464390 lncRNA downstream 112748 5531838 ~ 5534270 (+) True G391585
XM_026945385.2 mRNA upstream 44392 5367444 ~ 5369498 (+) True LOC113545788
XM_026945370.2 mRNA upstream 182451 5187559 ~ 5231439 (+) True LOC113545783
XM_026945168.2 mRNA upstream 334981 5074892 ~ 5078909 (+) True LOC113545709
XM_026945255.2 mRNA upstream 556916 4484089 ~ 4856974 (+) False LOC113545745
XM_026945293.2 mRNA downstream 8947 5428037 ~ 5436881 (+) False alpk1
XM_026945294.2 mRNA downstream 8949 5428039 ~ 5436881 (+) True alpk1
XM_034301088.1 mRNA downstream 10098 5429188 ~ 5436881 (+) False alpk1
XM_026945295.2 mRNA downstream 10098 5429188 ~ 5436881 (+) False alpk1
XM_026945167.2 mRNA downstream 18327 5437417 ~ 5442725 (+) True epdl1
TU461743 other upstream 4463483 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4608674 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4613324 790488 ~ 800566 (+) False G389524
TU465523 other downstream 807267 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 807267 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 1196869 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 1196869 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 1196869 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile