RNA id: XM_026945362.2


Basic Information

Item Value
RNA id XM_026945362.2
length 1653
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC113545777
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 4248870 ~ 4272437 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgcgtgtgcgtgtgagtgagtgtgagtgtgcgcGCGCCCCTGCTCTACCGAAGGCGCAAAAAAAGCCTCTATAGCGAACACCCTTCAAATATGGCGGAGGGGGAACTGGACGTCGATTCGCTCATCTCCAGGCTTTTAGAGGtgcgaGGATGTCGCCCAGGAAAGATTGTGCAGATGACGGAGGCGGAGGTGCGAGGGCTGTGTATTAAATCCCGAGAGATCTTCCTGAGTCAGCCCATTCTGTTGGAGCTGGAGGCCCCGCTCAAAATCTGCGGTGACATCCACGGTCAGTACACAGATCTGCTAAGGTTGTTCGAGTACGGCGGATTCCCCCCGGAGGCAAACTACCTCTTCCTGGGCGATTACGTGGACCGAGGAAAGCAGTCTCTGGAGACCATCTGCCTCCTGCTGGCCTACAAGATCAAATATCCCGAAAACTTCTTCCTGCTGCGGGGAAACCACGAGTGCGCCTCCATCAACCGCATCTACGGCTTCTACGACGAGTGCAAGCGCAGGTTCAACATCAAACTTTGGAAGACATTCACTGACTGTTTCAACTGTCTGCCCATCGCCGCCATCGTGGATGAGAAAATATTCTGCTGCCATGGAGGTCTGTCTCCTGACCTGCAGTCCATGGAGCAGATCAGACGGATCATGAGGCCCACAGACGTCCCTGACACAGGGCTGCTGTGTGACCTGCTGTGGTCCGACCCGGATAAAGACGTTCAGGGCTGGGGAGAGAATGACCGCGGCGTGTCCTTCACCTTCGGAGCTGATGTGGTCAGCAAGTTCCTCAACCGCCACGATCTGGACCTCATCTGCAGAGCGCACCAGgTGGTGGAGGATGGGTATGAGTTCTTTGCCAAGAGACAGCTGGTCACTCTGTTCTCTGCTCCGAACTACTGCGGCGAGTTTGACAACGCCGGCGGCATGATGAGTGTGGACGAAACGCTCATGTGTTCCTTCCagATCCTGAAGCCTTCAGAGAAGAAGGCTAAGTACCAGTACGGTGGAATGAACTCGGGGCGTCCCGTGACTCCGCCCCGCACAGCCACCCCACCCAAAAAACGGTGAACGCTCGAACGAGTGACGCCGAAATgtagagcaagagagagagaaagaaaagagtgaaCGAATCGGAGGATGAAGTACAAGGCAAGATCGAGTGTCAAAGCTCCCTCTGCAATTTCTACCATGATGGAAAAACAATGTAGTCATATACACAGCGAGAAGCGACCCTTTCTGATTTTAAACACTTATTAAACTTTCCCCTCATCTCCTAAACTTTCTTCTGTACTCCTATACTCTGTTCTTTTCTCCATCTTTCAGTCCCAGTCTTTGTCTGTGTAACCACGTTTTTCAATGAagtgttttggggaaaaatgtatacttactgacacacacacatacacacacacatacacgcacacacacacattagtctGTCTGCATATCGGAGTGTTCCACTTtcgttttgtttggtttgtgttttggtttacCTATGACAGAATGATGTACATTGACtagttctttctgtttttttagtttcattCTTCCCGACCTGTTTGAGAGAAACAGGAACACGTAAATAAACCAATAACTTCGTCTGGGTTTTCAGTAAATAAACCAGAATAAACTGAAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464117 lncRNA upstream 35042 4213244 ~ 4213828 (+) True G391386
XR_003404650.2 lncRNA upstream 72968 4149035 ~ 4175902 (+) False LOC113545714
XR_004577481.1 lncRNA upstream 72968 4162643 ~ 4175902 (+) False LOC113545714
TU464077 lncRNA upstream 76859 4166446 ~ 4172011 (+) True LOC113545714
TU463846 lncRNA upstream 847087 3400928 ~ 3401783 (+) True G391143
XR_004577489.1 lncRNA downstream 173019 4445456 ~ 4459340 (+) True LOC117596354
TU464251 lncRNA downstream 191490 4463927 ~ 4479339 (+) False LOC113545745
TU464291 lncRNA downstream 431331 4703768 ~ 4705703 (+) True G391500
TU464304 lncRNA downstream 472484 4744921 ~ 4746529 (+) True G391512
XR_004577463.1 lncRNA downstream 591859 4864296 ~ 5074406 (+) True LOC117596306
XM_026945404.2 mRNA upstream 28992 4217028 ~ 4219878 (+) False c28h11orf68
XM_026945405.2 mRNA upstream 28992 4217028 ~ 4219878 (+) False c28h11orf68
XM_034301362.1 mRNA upstream 28992 4217198 ~ 4219878 (+) False c28h11orf68
XM_026945410.2 mRNA upstream 28992 4217334 ~ 4219878 (+) False c28h11orf68
XM_026945411.2 mRNA upstream 28992 4217504 ~ 4219878 (+) False c28h11orf68
XM_026945336.2 mRNA downstream 62173 4334610 ~ 4403742 (+) True LOC113545764
XM_026945338.2 mRNA downstream 131546 4403983 ~ 4404906 (+) True LOC113545765
XM_026945357.2 mRNA downstream 134930 4407367 ~ 4408332 (+) True LOC113545774
XM_026945352.2 mRNA downstream 139325 4411762 ~ 4412705 (+) True LOC113545771
XM_026945353.2 mRNA downstream 142413 4414850 ~ 4416213 (+) True LOC113545772
TU461743 other upstream 3298463 934929 ~ 950407 (+) False G389438
TU461983 other upstream 3443654 804360 ~ 805216 (+) True G389525
TU461981 other upstream 3448304 790488 ~ 800566 (+) False G389524
TU465523 other downstream 1953920 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 1953920 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 2343522 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 2343522 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 2343522 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile