RNA id: XM_026945404.2


Basic Information

Item Value
RNA id XM_026945404.2
length 1455
RNA type mRNA
GC content 0.47
exon number 3
gene id c28h11orf68
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 4217028 ~ 4219878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTGATTCGGACCCAAGCGGTGGGAGTGactgagtgtgtatgtagtgttgttttgtgtaggtggtgttgttattgttttttttgtttgttttatttcgaTCAGCGACGCATTTCTGCATCAAATCTCGAGCAGTATGTAAAATCCTTCGCTTGTcTCTACTGAAAACATCTTACTCCTCATGAGGCGTTTATTGCTGGAAGCTACAACGACAacaaccaacataaacagagccGATGTCCCATGATGCTTTACTCAAAGTAGTCATTTTGTTATGAGTATAGGTGATACCATCACCAAAGGTACTCACCAAGTATAGGATTACACACCGCATCCACTGAGTCGCATTCAGAACAGAAGATGGAGGAAGAAGATGACCATCCCGGAGTACTTTCAGCAGAAGATTATGCTGCCGAGGCTATGGCGGCCGATCTGGATCCTTGGATCGTATTCGACGCCCGCAAAACTCCCAGAGCCGAGTTCCCCAGTTGGTTGGAGTCCAATCGTCCCTCGCAGGTGAGCCGCTTCGGGGACGACGTCTCAGGGCCTGTAGGGTGGATTGCCGTGTACGGCACCAACCACTGCCCGAGCCACGGCGATGTCTCGGGCTTGCAGGAGAGCTGGGAGAGACTTCTCTCCAGCGGCCGAGCCGTCACTTTCCAGACCATTAAAGAGCTCGCTCTGAACCACAACGTGCTCACGGGGAAATGGCTGATGCACCTGGATACGGGTTTCAAAGTGGACCACGCGTGGGAGTGCGTCGCGAAAGCCACTCTGGACGGGAAGATCTCTGTGGCCAAAGTGAGTCCGCGCGAGCCCAACTCGGACGGCCAGCACGTCATTTGCGTCTACAACAAGAACTTCACCGATGAGGAGCAGGTGATGCAGCTGGACGCGGCCATCAGGGCGACGGGCGTCAAGTGTCCTCTGTCTTACAAGCCAGACGTCTACACGTACCTGGGGATTTACAGGAATAACCGGTGGAAGCTGTGTCCCACAATTTACGAAAGCAAGTTCGATCTGGAGTGCGTTCCTCGGCGCTCACACATCATCAACAAAGTCACCAACTTGGAGGTTACATAAGCGGAAGATGAAAACTCCAATGTAGTGGACTCTCCTAGGAATACTGAagacagtttttttgtttgtttgtttgtttgtatggttggctgtttttatttttttttccccttgaatGACCTGATAACATTaatcttctttctttcaacCTAAAATAGTTCCCTGTTGACATTTTCTTAACTTTCTTACCAGTCTGTTTTTTGAGATTTTGGTTTTAAGCCAGGTTTAAAGAGATTGTACCTAATTTTTGAGCAACTTCTTCATCTCTGGTTTGCCACAATGCCAGTTAAGCCTTTAATCATTTGTGTTGAATTATTAAGGAACAAAAAGATACCACACCTCGTGTtcaataaatgtgtgaaaaatttTCTTCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464117 lncRNA upstream 3200 4213244 ~ 4213828 (+) True G391386
XR_003404650.2 lncRNA upstream 41126 4149035 ~ 4175902 (+) False LOC113545714
XR_004577481.1 lncRNA upstream 41126 4162643 ~ 4175902 (+) False LOC113545714
TU464077 lncRNA upstream 45017 4166446 ~ 4172011 (+) True LOC113545714
TU463846 lncRNA upstream 815245 3400928 ~ 3401783 (+) True G391143
XR_004577489.1 lncRNA downstream 225578 4445456 ~ 4459340 (+) True LOC117596354
TU464251 lncRNA downstream 244049 4463927 ~ 4479339 (+) False LOC113545745
TU464291 lncRNA downstream 483890 4703768 ~ 4705703 (+) True G391500
TU464304 lncRNA downstream 525043 4744921 ~ 4746529 (+) True G391512
XR_004577463.1 lncRNA downstream 644418 4864296 ~ 5074406 (+) True LOC117596306
XM_026945169.2 mRNA upstream 69960 3596154 ~ 4147068 (+) True nrxn2b
XM_034301108.1 mRNA upstream 69960 3596154 ~ 4147068 (+) False nrxn2b
XM_026945179.2 mRNA upstream 69960 3596154 ~ 4147068 (+) False nrxn2b
XM_026945174.2 mRNA upstream 69960 3596154 ~ 4147068 (+) False nrxn2b
XM_026945180.2 mRNA upstream 69960 3596154 ~ 4147068 (+) False nrxn2b
XM_026945362.2 mRNA downstream 28992 4248870 ~ 4272437 (+) True LOC113545777
XM_026945336.2 mRNA downstream 114732 4334610 ~ 4403742 (+) True LOC113545764
XM_026945338.2 mRNA downstream 184105 4403983 ~ 4404906 (+) True LOC113545765
XM_026945357.2 mRNA downstream 187489 4407367 ~ 4408332 (+) True LOC113545774
XM_026945352.2 mRNA downstream 191884 4411762 ~ 4412705 (+) True LOC113545771
TU461743 other upstream 3266621 934929 ~ 950407 (+) False G389438
TU461983 other upstream 3411812 804360 ~ 805216 (+) True G389525
TU461981 other upstream 3416462 790488 ~ 800566 (+) False G389524
TU465523 other downstream 2006479 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 2006479 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 2396081 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 2396081 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 2396081 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile