Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008128 |
| length | 7602 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 54 |
| gene id | XLOC_004260 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 35777329 ~ 36020005 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005220 | inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity | molecular_function |
| GO:0005262 | calcium channel activity | molecular_function |
| GO:0070679 | inositol 1,4,5 trisphosphate binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070604-2 | Predicted to enable inositol 1,4,5 trisphosphate binding activity and inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Used to study congenital heart disease. Human ortholog(s) of this gene implicated in Gillespie syndrome; spinocerebellar ataxia type 15; and spinocerebellar ataxia type 29. Orthologous to human ITPR1 (inositol 1,4,5-trisphosphate receptor type 1). |
| ensembl_id | ENSDART00000188805 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008124 | lncRNA | downstream | 36907 | 35725245 ~ 35741444 (-) | False | XLOC_004257 |
| TCONS_00008123 | lncRNA | downstream | 36907 | 35725245 ~ 35741444 (-) | True | XLOC_004257 |
| TCONS_00008837 | lncRNA | downstream | 36910 | 35664551 ~ 35741441 (-) | False | XLOC_004257 |
| TCONS_00008484 | lncRNA | downstream | 36911 | 35664551 ~ 35741440 (-) | False | XLOC_004257 |
| TCONS_00008839 | lncRNA | upstream | 271093 | 36242059 ~ 36246756 (-) | True | XLOC_004264 |
| TCONS_00008152 | lncRNA | upstream | 319842 | 36290808 ~ 36291682 (-) | True | XLOC_004266 |
| TCONS_00008841 | lncRNA | upstream | 513426 | 36484392 ~ 36687156 (-) | False | XLOC_004269 |
| TCONS_00008840 | lncRNA | upstream | 513426 | 36484392 ~ 36687156 (-) | False | XLOC_004269 |
| TCONS_00008161 | lncRNA | upstream | 513426 | 36484392 ~ 36687161 (-) | False | XLOC_004269 |
| TCONS_00008126 | mRNA | downstream | 15028 | 35759652 ~ 35763323 (-) | True | XLOC_004259 |
| TCONS_00008125 | mRNA | downstream | 21883 | 35744918 ~ 35756468 (-) | True | XLOC_004258 |
| TCONS_00008121 | mRNA | downstream | 202521 | 35447417 ~ 35575830 (-) | False | XLOC_004256 |
| TCONS_00008138 | mRNA | upstream | 66110 | 36037076 ~ 36040549 (-) | True | XLOC_004261 |
| TCONS_00008139 | mRNA | upstream | 70651 | 36041617 ~ 36046741 (-) | False | XLOC_004262 |
| TCONS_00008140 | mRNA | upstream | 71303 | 36042269 ~ 36156935 (-) | False | XLOC_004262 |
| TCONS_00008141 | mRNA | upstream | 71479 | 36042445 ~ 36046458 (-) | False | XLOC_004262 |
| TCONS_00008142 | mRNA | upstream | 77613 | 36048579 ~ 36051004 (-) | False | XLOC_004262 |
| TCONS_00008119 | other | downstream | 553212 | 35225022 ~ 35225139 (-) | True | XLOC_004254 |
| TCONS_00008105 | other | downstream | 1311838 | 34466395 ~ 34466513 (-) | True | XLOC_004247 |
| TCONS_00008102 | other | downstream | 1422689 | 34355544 ~ 34355662 (-) | True | XLOC_004245 |
| TCONS_00008088 | other | downstream | 1812079 | 33966158 ~ 33966272 (-) | True | XLOC_004234 |
| TCONS_00008078 | other | downstream | 2406984 | 33371251 ~ 33371367 (-) | True | XLOC_004227 |
| TCONS_00008174 | other | upstream | 1328405 | 37299371 ~ 37299485 (-) | True | XLOC_004279 |
| TCONS_00008194 | other | upstream | 2204105 | 38175071 ~ 38175150 (-) | True | XLOC_004294 |
| TCONS_00008207 | other | upstream | 2977021 | 38947987 ~ 38949751 (-) | True | XLOC_004305 |
| TCONS_00008210 | other | upstream | 3118909 | 39089875 ~ 39089991 (-) | True | XLOC_004308 |
| TCONS_00008222 | other | upstream | 4211715 | 40182681 ~ 40182796 (-) | True | XLOC_004319 |
