RNA id: XM_034301039.1


Basic Information

Item Value
RNA id XM_034301039.1
length 3909
RNA type mRNA
GC content 0.45
exon number 20
gene id LOC113544353
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8329665 ~ 8350126 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTATGAATATCAGAATAAAAAAGAGCGCAGGGTCACGCAGGCCTGGGACGCTGCTCGGGAAACACCTATTATTGCAGATGAGCAAAAACCTCGCAAGCTTGTGAGCTTCATCCAAATCATCACATGTACTCTTGTGGGAATCTTGGTGTTTGGGCTAGCCTTCTTCAGCAAAGCATCTCTGTTGCTATTAATAAACCTTTGCAGTGGAACATCAACAACCATAGACACCAAACCCTATGCTCTCCTCTTCATTGGGTGCCTTCTAATTGctccaagtgttttactgctgATCAAAAGCATTTGGAAAATTACTTTTAAGGATTCAAAAACCCCATCGACGCAAACTTTGCTATGGATTATTTCAGTGGAAACTTTGGTGGCTCTTGGATCTTCCATCCTAACCATGATATCTATGCCCCGATTTGACATCCTGACCAACGTGATGCTTCTGAATGGCATTGCCACATTATCAGCCATTCTGCAGGTGGTCGCAAATGCAGTCGCGCACGGAAGGAGACGATTTATTGCAACGTCGttagctgctgttgttttcttaaTTGCAGGTTTTTGCTTCTTTGCTGTTAACTATCTCAGAAAGCAGAACATGGTGCTATTCGTGGGTTTAGCCATAGGAGGCACTTTCCTGGTCTCTTTGAACTGGTGGGAGAACTACGCCATGCTTTTCCGCATCGTCTTCTTCCAGAACACAATCCGGGACATAAAAAGGTCCCACAACTTTGTGAACATTGTGGCTAGCTTGGTGCGAATTATTGTGACCTTCACTGTCCTTGGAGCTTATGTGAAGCTCTCAGGCCAGGAGTGGTCATCGGTGTTATCAGTCAACAGCTTTACTGAAACCCTCGTCTTGAGTCTGTTCGCCATTCAGGTTCTATCTTCAGCTCTGTGTCGCTACGTGGCCGTGGCTGCGTGCAAAATGCATGCTGTGCGCCGCAGCTTCCTCATTCCCATGATCTTCACATCTCCAGCCACATTGGGCGCCTTTGTGCTGGCTGTTTGGATTCCCTTTTTGAACATCAAACAAGAGAACAAAACCATATTTGCTGACTACTGTGATACCTTTGTGATCACGGAAAGCCCAGGGCTTGGCGTCGTGAGACTGATGCTGAGTGATTTAACTCGTGACCTGTGTCAACACATGCCAGACAAGGAGTCTTCGATGGGTTTTGGTCTTCTTGGATCATCTTTGGTGAGCTGGTGGATTGGCCTGGTGCTCTCCACACTCTACATCTGGTTCCTGAACACGGAACGTATTGCCAGGACAAAGGACTTGTTTGTGCGCAACCTTTATGAAGCAGCGTTCATTGACCAGTCCATGCTCTTGAACTCCAGGTTCGAGATTGTGCTCCAGCCAAGACATAACAGGGAAAAGGAGAAGGTGACCATCTACCTCTGTGCAACCATGTGGCATGAGACTGCAGATGAAATGATGAAGATGATCATATCGATGTTCAGGCTGGACAAGTTCCGACCAAAGAAAAACCAATTTAACGATGTTGTTTTTGAGTCTCACATTTATTTCGATGATGCTTTCCTGACCAAAGACAACCAGCGGTGTGTCAATGAGTATGCTGAGACCCTGGTGGAAGTCATCCGACAGGTTTATATCATATTCACAGAGGATTGTAAAAGTGTATTTAGGGAGAGAAAGCCTCTTCCTCACCAGAAAATCTTCCAAACGCCATACGGCTGCCGTCTGCAGTACACACTTCCTCACGGCAACACACTGTTTGTTCACTTCAAGGACAAACTCCAGATCCGCCACAAAAAGAGATGGTCTCAGATCATGTACATGTACTACCTTCTTGGCTGGAGGCTGCACAAGAAATACTATCAGATGTACAGGGAAGGGGATGATCAGCTGACAAATATTGAAGACCAGTTAAGAAAAGCCAAAAAGACCACATATATTCTGGCTCTAGATGGAGACACAGATTTCCAGCCTTCAGCAGTCATGCTTTTAGTGGATCGGCTCAGGTTGTACCCCGAAGTGGGAGCTGCTTGTGGCAGGATCCATCCTACTGGCACAGgccCGATGGTATGGTATCAGAAATTTGAGTATGCTGTGGGTCACTGGCTCCAGAAGACAGCTGAGCATGTGTTCGGATCTGTGTTGTGCAGCCCGGGCTGTTTCAGCCTGATGCGTGCAGAGGCACTCATGAGTGACAACGTCATGAAGAGATATACAAGAAAAGCAACTGAGGCTTCCCACTATCTACAATATGACCAGGGTGAGGACCGCTGGCTGTGCACACTGCTCCTGCAGCAGGGATGGCGAGTGGAGTACAGTGCTGCCTCTGACTCATACACCAATGCTCCACAGGAGTTCAAGGAGTTTTACAACCAACGGCGGCGCTGGGGCCCTTCCACAATGGCCAACACTCTGGACCTTCTTTCCAGTGGCAGTGTCACTGCACGAATGAACAAGTCCATATCACGACCTTACATTATCTACCAGACTATCACCATGGCTGCCTCGATCTTGGGCCCAGCTACAGTCTGCCTCATGATTGCAGGATGCTTTACATTCATCCTCAAGATAGATGCCAATGTTGCTCTTCTGATGGCGGTTATTCCTCCTGCAATCTACATAATTCTCTGCTATTATCTTGGGCAAGCAAAATCAGACTTACAAATAAGAATTGCTGGCGTCATGAGCATATTCTATGCTTTTCTAACGACAGCAGCCATCTTATCTATTATAGGGGATATGGTACTGCAGCAGACTTTCGTGACCCCAAATGGCTTGTTCTTCATAGGCATAACCTCTGTGTACATTGCCACCGCCCTTCTTCATCCTCATGAGTTCCATCTTATCATCTTTGGCTTCCTTTATGTCATCTGCATCCCCAGTGGCTACCTGCTGCTGGCAATTTATTCCATGGTCAACATGAACAATGTGTCATGGGGCACACGCGAATCTGCCAACCAGACCACTGGATCTGAGGGGAACCTTCAGCAAAATGTCAAGTGCCAGAAGCTGTTCAAAATATGTGGCTACAATCTGGAGGTTCAACTGAACGAAGACAAAAAAGTGATGTGTGCAGTGCCAGAGAGCGAACCTCTTTTGAAAGTCGAAACCAAAGTGCCATCCGAACCTATAGAAAGaccTTTCATTGAGAACTTTTTTATTCAACAGTTGGCAGAAAGCTCTGGTGAACTGGCCCTTATGGAGCACAGCTTTAATTTGgaagaagaaaagttttGGAAGGACCTAATTGAACAATACCTAAAGCCATTAAAgactgataaaaaaaaggaagaaaaagtcaAAGCAGATCTGAAAGACCTACGCAACAAGGcaacttttgtgttttttatctgTAATGCCCTGTGGCTTGTGGCTACTTTCTTTTTGCAAGCCATTGGCACTATAATCAAAATCCCCATCCCAACGACTTATACCAATGGAACAATTGACCATAACAGGACGCTTTATATCGATCCTATTGGACTGATGTTCCTCATCAGTTTTGCAGGCCTCCTTATTATCCAGTTTGCAGCTATGGTGTGGCACAgagtCCAAACTTTAATCCATTTCACTGCTTACACTGGGACTGAGGCCATGGTTAACAGGAAGGTGATGATAAACTCTCTGGAACCGATCACTGAAGAAAAcaATTTTCTTTAGGTGGatattaaattgattaaaagCCTACAAGTGGATGATCTAAAAGATGAACTGTGATGGGAAACTTTGCAACAACACAAACCTGGCAAACCTAAGCCTCCTTAGGCTATACAATATCTGCTTATTGGGATTGAAAGAATTAgtgttttttaaacactgtttacaATTATTTGTTACTTCTCCTTTCACTGTAgtaactgttattattattattattattattattattattattattattattagggggccaagcac

Function

GO: NA

KEGG:

id description
K00698 CHS1; chitin synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467449 lncRNA upstream 44326 8285006 ~ 8285339 (+) True G394262
TU467447 lncRNA upstream 49461 8279534 ~ 8280204 (+) True G394260
TU467413 lncRNA upstream 94505 8234679 ~ 8235160 (+) True G394229
TU467330 lncRNA upstream 175887 8152460 ~ 8153778 (+) True G394156
TU467329 lncRNA upstream 177277 8151403 ~ 8152388 (+) True G394155
TU467489 lncRNA downstream 70556 8420682 ~ 8440437 (+) True G394291
TU467505 lncRNA downstream 116143 8466269 ~ 8466602 (+) True G394306
TU467590 lncRNA downstream 310570 8660696 ~ 8661230 (+) True G394373
TU467767 lncRNA downstream 502418 8852544 ~ 8852767 (+) True G394520
TU467774 lncRNA downstream 562754 8912880 ~ 8913084 (+) True G394527
XM_034301321.1 mRNA upstream 28654 8289291 ~ 8301011 (+) True LOC113544354
XM_034301136.1 mRNA upstream 50205 8263979 ~ 8279460 (+) True ddx21
XM_034301137.1 mRNA upstream 50205 8263979 ~ 8279460 (+) False ddx21
XM_034301138.1 mRNA upstream 50205 8263992 ~ 8279460 (+) False ddx21
XM_026943233.2 mRNA upstream 76998 8240639 ~ 8252667 (+) True si:ch1073-291c23.2
XM_026943138.2 mRNA downstream 28288 8378414 ~ 8389447 (+) True chs1
XM_026943208.2 mRNA downstream 50668 8400794 ~ 8410541 (+) True LOC113544399
XM_026943209.2 mRNA downstream 50668 8400794 ~ 8410541 (+) False LOC113544399
XM_026943189.2 mRNA downstream 64347 8414473 ~ 8437196 (+) True slc30a6
XM_026942941.2 mRNA downstream 124758 8474884 ~ 8486535 (+) True LOC113544248
TU467438 other upstream 70363 8258928 ~ 8259302 (+) True G394251
TU466595 other upstream 898755 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1428725 6896993 ~ 6900940 (+) False LOC117596330
XR_003404502.2 other upstream 1710983 6615959 ~ 6618682 (+) False LOC113544406
trnal-cag_18 other downstream 346071 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 785831 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1750886 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1849197 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other downstream 1849197 10199323 ~ 10224804 (+) False LOC113544300

Expression Profile