RNA id: XM_034301137.1


Basic Information

Item Value
RNA id XM_034301137.1
length 2577
RNA type mRNA
GC content 0.49
exon number 16
gene id ddx21
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8263979 ~ 8279460 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGACGCTAACGGTCCTTTTCCTGCCTGTTCCCGTGGCAGTGGCTGTGTTCATCTGCGGGAGAAACGGTACACAATGCCATCATTAGTTTTAACCAGCAGTGACAACGTTATCACCATGAACGACGTGGACGAGGGATTAGACAGCAATTTGGAGACCAAAaaaaagaaagacaaggtcaagaagaagaaaacgACTGTGACAGAAGAGTCTGCTGACTGCGATCCACCGGCTCCCAAAAAGGTAAAACGAGAAAAGATGGACACAGCCAACGGGACCGTGCAGACATCTCCCGACGTCAATGGAAACGTCGGGAGGAAACCAGTTAAAGTTAAGAACCCGGCAGGCGAGCAGTCAGAGaagaagaaaaagaaggcaGCTACATCAGATGACACAACAATCGACCAAGCACCATCTGTCAATGGCGTTAGTACAAACTCACCAAAGACTCAAGTGAAAGTCAATGGGCATGTCACAGACTCGACGCAGTCCAGTGAAGACTCCAACAGTGAGAGTGAAAAGGATGTGGAGACACCAGAGCAAAGAGAGGGCGCCTTCTCTAATTTCAGAATCTCACAGGACACCATCAAGCTACTCCAAGCACGGGGTGTGACGTATCTGTTTGATATTCAAGTGAAGACCTTCAACTCTGTGTATGATGGGAAGGACGTGATCGGCCAAGCCCGAACCGGCACTGGAAAGACTTTCTCTTTTGCAGTCCCACTAGTAGAGAAACTACAATCAGGAGCTGAGGACAAAAGAAGAGGGAGAGCTCCGAAAGTGCTGGTTCTCGCTCCTACTCGAGAGCTGGCAATTCAGGTGGCTAAAGACTTCAAGGATATCACCAGGAAGCTCTCTGTTCACTGCTTCTATGGAGGAAGCTCCTACAACCCTCAAGTGGATGCCATTCGCAGCGGCATCGATGTTCTTGTTGGCACCCCAGGCCGAATAAAAGACCACCTTCAGAACAACAAACTGGATCTGTCCCAGCTGAAACATGTGGTGCTGGATGAAGTGGACCAAATGCTTGATATGGGCTTTGCTGAACAAGTGGAGGAGATCCTCTCTGCTTCCTACAAAAAAGGTGATGAAAGCAACCCTCAGACTCTCCTCTTTTCTGCCACTTGTCCTCCTTGGGTTTATGACGTGGCTAAGAAGTACATGCGCTCCCAGTATGTTCACGTGGACCTCATAGGCAAAAAATCTCAGAAAGCAGCCACTACAGTTGAGcATCTGGCCATAGCATGCCACTGGTCTCAGAGGGCAGCAGTGATTGGTGATGTAGTGCAGGTGTATAGCGGCAGCCACGGACGCACCATCGTCTTCTGTGAGACCAAGAAGGAAGCACATGAGCTGTCCATGAACACATCCATCAAACAGAGTGCACAGTCTTTGCATGGAGACATTCCTCAGAAACAACGAGAGCTCACCCTGAAGGGCTTCAGGAACGGCAATTTCGAGGTCCTGGTGGCTACCAATGTGGCTGCACGAGGCCTCGATATCCCAGAAGTTGATTTGGTTGTACAGTGTTCTCCTCCAAAGGACGTTGAGTCATATATTCACCGTTCTGGGCGAACTGGCAGAGCGGGAAGAACTGGCATCTGCATCTGTTTCTATCAGCGCAAAGAAGAAGACCAACTGCGATATGTGGAGCAGAAGGCTGGCATTACTTTCAAGCGTGTTGGCGTCCCAACTGCTAATGACATCGTCAAATCCTCCAGTAAAGATGCAGTCAGGTTCCTGGATTCTGTACCTCCAGCAGCTGTAGAACATTTCCGTGCAGCGGCCGAGAGGCTAATCGAAGAGCGAGGTGCAGTGGAGGCGCTAGCCGCTGCTCTTGCACACATATCAGGAGCCACGAGTCTGGAGCAGAGATCGCTCCTCAACTCAGATGCTGGTTATACCACGTTAGTGCTCAACTGCTCTCAAGAGATGCATAACATCGGCTACGCCTGGCGAGGGCTGAAAGAGCAGCTCGGGGAGGAGATAGACGACCAGATCAAACGAATGACCTTCCTTAAGAGTAAAAAGGGAGTTTGCTTTGACGTCCCAGCCGATAAAGTGAAAGAAATCCAGGACAAATGGCAGGATGGCCGCAGGTGGCAGCTGACCATCGCCACTGAACTTCCCGAATTGGAGGAAAGCATGCGGAACCGTGGAGAAAGAGGGTCTGGTGCAAGGGCCAGAGGTCATGGTGGATTCCGCAGTGGCTTCCGCAATGGCTTCCGTGGTGGCAACAACCGAGGTGCAGGaagaggaggtggaggaagaggtggaagaagagatggaggaagaggtgGTGCTCAAAAGAGGAGCTTCAGCCAGGCCTTTGACTATTAAACAGCATACATTTGCTCTTGAGTGACTTTCTTTTCCAGCATTGATGGCTGGGtctgtcagttttttttccacttgtatTTGGGGAATCAGCCATTGCACTTCACCGGAAAACTGCTTTCCCAAACCTTTCATAGACAAAACAAGATAATTGCATTGCaattgtgtatttaaacagCTCTATTTAAGCCCATTCACATGAATGTGAATTTCATTAAAGTTGTCTTAATACACATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467413 lncRNA upstream 28819 8234679 ~ 8235160 (+) True G394229
TU467330 lncRNA upstream 110201 8152460 ~ 8153778 (+) True G394156
TU467329 lncRNA upstream 111591 8151403 ~ 8152388 (+) True G394155
TU467327 lncRNA upstream 114947 8148554 ~ 8149032 (+) True G394153
TU467324 lncRNA upstream 117862 8145443 ~ 8146117 (+) True G394150
TU467447 lncRNA downstream 74 8279534 ~ 8280204 (+) True G394260
TU467449 lncRNA downstream 5546 8285006 ~ 8285339 (+) True G394262
TU467489 lncRNA downstream 141222 8420682 ~ 8440437 (+) True G394291
TU467505 lncRNA downstream 186809 8466269 ~ 8466602 (+) True G394306
TU467590 lncRNA downstream 381236 8660696 ~ 8661230 (+) True G394373
XM_026943233.2 mRNA upstream 11312 8240639 ~ 8252667 (+) True si:ch1073-291c23.2
XM_026943126.2 mRNA upstream 26487 8207670 ~ 8237492 (+) False vit
XM_034301321.1 mRNA downstream 9831 8289291 ~ 8301011 (+) True LOC113544354
XM_034301039.1 mRNA downstream 50205 8329665 ~ 8350126 (+) True LOC113544353
XM_026943138.2 mRNA downstream 98954 8378414 ~ 8389447 (+) True chs1
XM_026943208.2 mRNA downstream 121334 8400794 ~ 8410541 (+) True LOC113544399
XM_026943209.2 mRNA downstream 121334 8400794 ~ 8410541 (+) False LOC113544399
TU467438 other upstream 4677 8258928 ~ 8259302 (+) True G394251
TU466595 other upstream 833069 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1363039 6896993 ~ 6900940 (+) False LOC117596330
XR_003404502.2 other upstream 1645297 6615959 ~ 6618682 (+) False LOC113544406
trnal-cag_18 other downstream 416737 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 856497 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1821552 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1919863 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other downstream 1919863 10199323 ~ 10224804 (+) False LOC113544300

Expression Profile