RNA id: XM_034301227.1


Basic Information

Item Value
RNA id XM_034301227.1
length 670
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC117596358
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 4072 ~ 5956 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTACTGTGTCTGCGGCTGGAGACGAGGCGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGAATAACTGGAATTCAGAGTGATGCTCAGATTCTGTGGTCTTATGGACCTGAGAAAGCAGAGGAAAAGATATTGAACAGTCAGGTTGAGAGATTTAAAGAGCAACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCACAAATGATTCtggagtttatttattacaagtcATCACTGGACGTCTCACATCCAAGactttcagtgtcagtgtttatgCTCCAGTATCAACTCCAGTAATAAGAAATCAAAGAGGAAAACGAAGTGTGTCTTCCACAGAGCAGTGTTTCCTCCTGTGCACTGTGGAGAATGGAGAAGATGTGAAGTTATCCTGGTACAGAGGGAATGAGAGAATCTCCATCACCAATAACACAGATCTCAGTGTTCCCCTCAATCTCCCACTTCAAATACAACTCCATGatattaacactaacacttatACCTGTGTGTCTGCAAACCCTGTCAGCAGTAAAACAGCTTCTCTCAACATCGCACAGCTCTGTGATCATAACTCAGGACAAACTAGTGGTTCCCATTCACTGCTTCCTGTCCTGATATCTGTTGGAGTTTTGTGTTCATAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461779 lncRNA downstream 41616 47572 ~ 49620 (+) True G389450
TU461782 lncRNA downstream 43176 49132 ~ 49620 (+) False G389450
TU461865 lncRNA downstream 93258 99214 ~ 146586 (+) False G389456
TU461800 lncRNA downstream 144224 150180 ~ 181013 (+) True G389456
TU461811 lncRNA downstream 164601 170557 ~ 173094 (+) False G389456
XM_034301259.1 mRNA downstream 20712 26668 ~ 30550 (+) True LOC117596365
XM_026910821.2 mRNA downstream 54992 60948 ~ 67902 (+) True ccdc86
XM_034301264.1 mRNA downstream 63494 69450 ~ 74454 (+) True si:ch211-217k17.11
XM_034301263.1 mRNA downstream 63499 69455 ~ 70725 (+) False si:ch211-217k17.11
XM_034301262.1 mRNA downstream 106235 112191 ~ 114613 (+) True LOC117596367
TU461802 other downstream 164601 170557 ~ 174192 (+) False G389456
XR_004577502.1 other downstream 285023 290979 ~ 328479 (+) False smu1b
XR_004577501.1 other downstream 285023 290979 ~ 310720 (+) False smu1b
trnak-uuu_21 other downstream 311626 317582 ~ 317654 (+) True trnak-uuu_21
TU461928 other downstream 327546 333502 ~ 348335 (+) False LOC113524533

Expression Profile