RNA id: XM_034301241.1


Basic Information

Item Value
RNA id XM_034301241.1
length 5393
RNA type mRNA
GC content 0.42
exon number 34
gene id LOC113524531
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 125116 ~ 180742 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGACTGAGAACATTCACATCTGCTATCTGTGGACACAAGattataAACAACACAATGGACCCGAGGCTGGTACTGCCTGTTTTGTGTATGATTTCTGCAAGTGCTCTGGCAGACACTCCAAGTAATCAGACTGCAGTGAATGTAACTTTACCAAACACTTCTGCAGTATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTTCAAGTATCCGTACTCAGcttGAACCAATTTACAGACAAATCTTCAAAAACTTTCTCCAGATGATAATTCATAGTTTCAGgaaTGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGTTAATGCGACTACCGCCAACTCAAGCTTGAACATTATTACAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAACACAACTTCACCCCCGAgcacaactacaaccacaaGCACAAATACAACCACTAACACAACTTCACCCACGAGCACAAATACAACCCCGAGCACAACTACAACCCCGAGCACAAATACAACCATGAGCACAAATACAACCCCGAGCACAACTACAACTCCGAGCACAAATACAACCACAAGCACAAATACAACCACTAACACAACTTCACCCCCGAGCACAAATACAACCACTCCTGCAGTAGCTGCAATATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTCGCAGCAAAAGCTACAAGTATCCGTACTCAGcTTGAACCAATTTACAGACAAATGTTCAAAAACTTCCTCCAGATGATAATTCATGGTTTCAGGAATGGTTCGATTTTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGTTAATGCGACTACCGCCAACTCAAGCTTGAAAATTACTCCAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAACACAACTTCACCCCCGAgcacaactacaaccacaaGCACAAATACAACCACTAACACAACTTCACCCACGAGCACAAATACAACCCCGAGCACAACTACAACCCCGAGCACAAATACAACCACGAGCACAAATACAACCCCGAGCACAACTACAACCCCGAGCAAAACTACAACCACAAGCACACCTACAACCACTCCTGCAGTAGCTGCGATATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTACAAGTATCCGTACTCAGcTTGAACCAATTTACAGACAAATGTTCAAAAACTTCCTCCAGATGATAATTCATGGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGTCCTTGTTAATGCGACTACCACCAACTCAAGCTTGAAAATTATTCCAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAACACACCTACAACCCCGAGCACAACTACAACCACGAGCACAACTACAACCCCGAGCACAACTACAACCTCGAGCACACCTACAACCCCGAGCACAACTACAACCACGAGCACAACTACAACCCCGAGCACAACTACAACCTCGAGCACACCTACAACCACTCCTGCAGTAGCTGCAATATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTACAAGTATCCGTACTCAGcttgaACCAATTTACAGACAAATGTTCAAAAACTTCCTCCGGATGATAATTTATGGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGTTAACGCGACTACCACCAACTCAAGCTTGAAAATTACTCCAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAACACAACTTCACCCCCGAgcacaactacaaccacaaGCACAAATACAACCACTAACACAACTTCACCCCCGAGCACAAATACAACCATGAGCACAAATACAACTACGAGCACAACTACAACCCCGAGCACAAATACAACCACGAGCACAACTACAACCACGAGCACAATTACAACCACGAGCACACCTACAACCACTCCTGCAGTAGCTGCAATATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTACAAGTATCCGTACTCAGcTTGGACCAATTTATAGTCAGATCTTCAAAAACTTCCTCCGGATGATAATTCATAGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGACACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGTTAATGCGACTACCGCCAACTCAAGCTTGAAAATTATTCCAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAACACACCTACAACCCCGAGCACAACTACAACCACGAGCACAACTACAACCCCGAGCACAACTACAACCACGAGCACACCTACAACCACTCCTGCAGTAGCTGCAATATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTACAAGTATCCGTACTCAGcttgaACCAATTTACAGACAAATGTTCAAAAACTTCCTCCAGATGATAATTCATGGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGCTAATGCGACTACCACCAACTCAAGCTTGAACATTATTACAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAATGCAACTTCACCCCCGAGCACAAATACAACCACAAGCACAAATACAACCACTCCTGCAGTAGCTGCAGTATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTACAAGTATCCGTACTCAGcttgaACCATTTTACAGACAAACCTTCAAAAACTTCCTCCGGCTGATAATTTATGGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGCTAATGCGACTACCACCAACTCAAGCTTGAACATTATTACAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAATGCAACTTCACCCCCGAGCACAAATACAACCACAAGCACAAATACAACCACTAACACAACTTCACCCCCGAGCACAAATACAACCACTCCTGCAGTAGCTCCAATATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTACAAGTATCCGTACTCAGcttgAACCAATTTACAGACAAACCTTCAAAAACTTCCTCCAGATGATAATTCATGGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGCTAATGCGACTACCACCAACTCAAGCTTGAACATTATTACAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAACGCAACTTCACCCACGAGCACAAATACAACCACGAGCACAAATACAACCACGAGCACAAATACAACCACTCCTGCAGTAGCTGCAGTATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTTCAAGTATCCGTACTCAGcttgAACCAATTTACAGACAAATGTTCAAAAACTTCCTCCGGATGATAATTTATGGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGTTAACGCGACTACCACCAACTCAAGCTTGAACATTATTACAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAACACAACTACAACCCCCAGCACAACTACAACTACGAGCACACCTACAACCACTCCTGCAGTAGCTGCAATATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTACAAGTATCCGTACTCAGGTTGAACCATTGTACAAGAAAGCCTTTAAAAACTTCATCATcatgaaaattataaaattcTTGAATGGCTCTATTGTGACAGAAAGCAACCTATTCTTCAGTGCTAATGCCGCAAATGTTACTGCGGCCCAAGTGAAAAACACTCTTCTCGATGGACTTAAAAACTTGACTTTTACTGTTGATCCAAACTCCATCAACGTCACCCAGACTCTTGGGAATTCCATGCCACCAGTGATTGCCAGCTCACTTTCCGTGATATGGATGTCTCTTCTATCACTTCTGCTTTCAGTGGCATTGCACTTCTAGCTCTAGACCTGATCATACACAATAACTTAATGGTACTTATTTCTATTTAACGATCCGAATTCTTCTACTGaagcaaataaacacagactgttgttttttttctttcaccataAACAGTAACATGTAAGTCTGCTTTTTATTGAGAACTATTTAAGATAAAGGGAATATGGGGAGATACAGTTCATTCTtataaactatttatatttacatgagAAATACAAATATCTTGACTTGCTGAAACTGGGGATTTAATGAGGGTAGTGAGTTGCCTGAATATTTCTCCACATCTCAACAGTCTTTAAAAGAATTGTtgtctttcatttattaaatttaactcAATTGCAAAATTCTTTAAAACGTTGTGTACTtaacagtatatgtatataattgcTATACACTTAAACGTAAACCTACATATGACTTCTGTATAtcagtgtataaatattattaacatcATATGAAATAAAGCTTTGGATACca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461779 lncRNA upstream 75496 47572 ~ 49620 (+) True G389450
TU461907 lncRNA downstream 129473 310215 ~ 328491 (+) False smu1b
TU461926 lncRNA downstream 158131 338873 ~ 346593 (+) True G389490
TU461929 lncRNA downstream 158858 339600 ~ 375948 (+) True G389492
TU461930 lncRNA downstream 167898 348640 ~ 350005 (+) False LOC117596315
TU461763 lncRNA downstream 172065 352807 ~ 374670 (+) True G389442
XM_034301262.1 mRNA upstream 10503 112191 ~ 114613 (+) True LOC117596367
XM_034301264.1 mRNA upstream 50662 69450 ~ 74454 (+) True si:ch211-217k17.11
XM_034301263.1 mRNA upstream 54391 69455 ~ 70725 (+) False si:ch211-217k17.11
XM_026910821.2 mRNA upstream 57214 60948 ~ 67902 (+) True ccdc86
XM_034301259.1 mRNA upstream 94566 26668 ~ 30550 (+) True LOC117596365
XM_026910787.2 mRNA downstream 103905 284647 ~ 289660 (+) True rps6
XM_026910783.2 mRNA downstream 110237 290979 ~ 306559 (+) True smu1b
XM_026910784.2 mRNA downstream 113774 294516 ~ 306559 (+) False smu1b
XM_026910831.2 mRNA downstream 152397 333139 ~ 336059 (+) True LOC113524533
XM_034301027.1 mRNA downstream 167654 348396 ~ 350003 (+) True LOC117596315
XR_004577502.1 other downstream 110237 290979 ~ 328479 (+) False smu1b
XR_004577501.1 other downstream 110237 290979 ~ 310720 (+) False smu1b
trnak-uuu_21 other downstream 136840 317582 ~ 317654 (+) True trnak-uuu_21
TU461928 other downstream 152760 333502 ~ 348335 (+) False LOC113524533
TU461720 other downstream 221260 402002 ~ 932118 (+) False G389438

Expression Profile