RNA id: XM_034301259.1


Basic Information

Item Value
RNA id XM_034301259.1
length 1777
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC117596365
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 26668 ~ 30550 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGTGCACTGAATCCTTCACTCACACTGATGTTCAGGACGACGGGAAAATGTCTGGCTGACAAACACTTACTATGGATTATGAAAATGTGACTATTTTAGCAGGAAACAGGATTCTCTGGACTTTTCTCCTCCTGCTGTGCTGTTTACTGTGTGCGGCTGGAGACGAGACGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTTCGTACTGGGATCACTGGAATTCAGAGTGATGCTCAGATTCTGTGGTCTTATGGACCTGAGAAAGCAGAGGAAATTATATTGAACAGTCAGGTGTTTAAAGGAGAAACTGTTACAGAAATCAGTGAGAGATTTAAAGAGCAACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCAGAAATGATtctggaatttatttattgcaagTTCTTGCTGGACGCATATCATCTAGGactttcagtgtcagtgtttatgCTCCAGTATCAACTCCAGTAATAAGAAATCAAAGAGGAAAACGAAGTGTGTCTTCCACAGAGCAGTGTTTCCTCCTGTGCACTGTGGAGAATGGAGAAGATGTGAAGTTATCCTGGTACAGAGGGAATGAGAGAATCTCCATCACCAATAACACAGATCTCAGTGTTCCCCTCAATCTCCCACTTCAAATACAACTCCATGatattaacactaacacttatATCTGTGTGTCTGCAAACCCTGTCAGCAGTAAAACAGCTTCTCTCAACATCGCACAGCTCTGTGATCATAACTCAGGACAAACTGATCATTCCCGTTCACTGCTTCCTGTCCTGATATCTGTTGgagtttttgtgttattaataatacctgtatgtgtgtggttttggctgaaaaagaaaaagcgaCCAGtttctGAAGTGACTTACGCTGCTGTGAATATTACAACTCACAGTGCAGAGAGACTTAGAGAGGAAGAAAACTCGAGAGAAACGCatggtgaagcagagagtgtctgtgtggtgtatTCAGAGGTGAACAGATCCACATAATTCAATATATCATTTTTACTATATTGTTAATTATAAATCTTATTATTATGATCTATGTAATTGGTCACAAAAGGTCACTGTACATGTTACCTAAGGCATTTACATGTGCTGTTTGTCTTCAGGCAtcagtgtttaatattaatttaacatttgcaTGTGCTCGttatgtaaatatgaatatcaACTTTAAagttagcttaaaaaaaaaccctaatgtCAAAAATGGCAAGCTAATCAAAAATGCTTCACTGGAACACAtcagtttttttaaaggaatcaGCAGCTTCAGTTTTCCAGCTGCTCCTCGGTGTTTACGCTTCTCACATTACAGCCCTATTGTCCagatcagatacagatacaggtgcAGAGCTCTGggttagaggtgtgtgtgggactgGAACGAGaaaactgaacacactgcacgaTAAAGCCTGTAACCCTGAAGACATAACACCAGCCTGTTAAAGCtcctgactgagagagagacagatctaGAAGATGAAGTTAAAGGTGTTAGAGTTGTCGTTTGTTTGTTCATCAGATTAACACGGGTACCGTAATTCCTGAAAAACCTGATAAGTCAATATTGTTCCTGGAACACTGCTTGTTCAGGCTCAGTGTGTAGCTCTAAACACAGCGTCATAACTGAAAGACACAGAAGCGTCAGAGAGCTTGTATtatatgaaagagagagagaagtgtttgctgtgtgtgtttgtttttttaataaaaatgtaaaagtgtaaa

Function

GO: NA

KEGG:

id description
K06582 CD244; natural killer cell receptor 2B4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461779 lncRNA downstream 17022 47572 ~ 49620 (+) True G389450
TU461782 lncRNA downstream 18582 49132 ~ 49620 (+) False G389450
TU461865 lncRNA downstream 68664 99214 ~ 146586 (+) False G389456
TU461800 lncRNA downstream 119630 150180 ~ 181013 (+) True G389456
TU461811 lncRNA downstream 140007 170557 ~ 173094 (+) False G389456
XM_034301227.1 mRNA upstream 20712 4072 ~ 5956 (+) True LOC117596358
XM_026910821.2 mRNA downstream 30398 60948 ~ 67902 (+) True ccdc86
XM_034301264.1 mRNA downstream 38900 69450 ~ 74454 (+) True si:ch211-217k17.11
XM_034301263.1 mRNA downstream 38905 69455 ~ 70725 (+) False si:ch211-217k17.11
XM_034301262.1 mRNA downstream 81641 112191 ~ 114613 (+) True LOC117596367
XM_034301241.1 mRNA downstream 94566 125116 ~ 180742 (+) True LOC113524531
TU461802 other downstream 140007 170557 ~ 174192 (+) False G389456
XR_004577502.1 other downstream 260429 290979 ~ 328479 (+) False smu1b
XR_004577501.1 other downstream 260429 290979 ~ 310720 (+) False smu1b
trnak-uuu_21 other downstream 287032 317582 ~ 317654 (+) True trnak-uuu_21
TU461928 other downstream 302952 333502 ~ 348335 (+) False LOC113524533

Expression Profile