RNA id: XM_034301261.1


Basic Information

Item Value
RNA id XM_034301261.1
length 942
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC117596366
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 145825 ~ 147742 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAACCACTCCTGCAGTAGCTGCAATATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTCCACAGTTTGCAGCAAAAGCTACAAGTATCCGTACTCAGcTTGAACCATTTTACAGACAAACCTTCAAAACTTCCTCCGGATGATAATTTATGGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGTTAATGCGACTACCACCAACTCAAGCTTGAAAATTATTCCAAATTCTATAAATGTCACTCGGGTTCCTGAGACAAACTCCTCTTCACCAAACACACCTACAACCCCGAGCACAAATACAACCACTAACACAACTTCACCCCCGAGCACAAATACAACCATGAGCACAAATACAACCCCGAGCACAACTACAACCCCGAGCACAACTACAACCACGAGCACAACTACAACCACGAGCACACCTACAACCACTCCTGCAGTAGCTGCAATATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTACACAGTTTGCAGCAAAAGCTACAAGTATCCGTACTCAGcttgaaCCAATTTACAGACATATCTTCAAAAACTTCCTCCGGATGATAATTTATGGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACTCCACAGTAAAAGATGCCCTTGTTAACGCGACTACCGCCAACTCAAGCTTGAAAATTACTCCAAATTCTATAAATGTCACCCGGGTTCCTGGTCAGTATACACTTTAAAGgatattgcattttaataacTGAGTGGTACATGTAGATACTCTAATTCCAGTTTAACCTCTCAAT

Function

GO: NA

KEGG:

id description
ko05332 Graft-versus-host disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461779 lncRNA upstream 96205 47572 ~ 49620 (+) True G389450
TU461800 lncRNA downstream 2438 150180 ~ 181013 (+) True G389456
TU461811 lncRNA downstream 22815 170557 ~ 173094 (+) False G389456
TU461907 lncRNA downstream 162473 310215 ~ 328491 (+) False smu1b
TU461926 lncRNA downstream 191131 338873 ~ 346593 (+) True G389490
TU461929 lncRNA downstream 191858 339600 ~ 375948 (+) True G389492
XM_034301262.1 mRNA upstream 31212 112191 ~ 114613 (+) True LOC117596367
XM_034301264.1 mRNA upstream 71371 69450 ~ 74454 (+) True si:ch211-217k17.11
XM_034301263.1 mRNA upstream 75100 69455 ~ 70725 (+) False si:ch211-217k17.11
XM_026910821.2 mRNA upstream 77923 60948 ~ 67902 (+) True ccdc86
XM_034301259.1 mRNA upstream 115275 26668 ~ 30550 (+) True LOC117596365
XM_026910787.2 mRNA downstream 136905 284647 ~ 289660 (+) True rps6
XM_026910783.2 mRNA downstream 143237 290979 ~ 306559 (+) True smu1b
XM_026910784.2 mRNA downstream 146774 294516 ~ 306559 (+) False smu1b
XM_026910831.2 mRNA downstream 185397 333139 ~ 336059 (+) True LOC113524533
XM_034301027.1 mRNA downstream 200654 348396 ~ 350003 (+) True LOC117596315
TU461802 other downstream 22815 170557 ~ 174192 (+) False G389456
XR_004577502.1 other downstream 143237 290979 ~ 328479 (+) False smu1b
XR_004577501.1 other downstream 143237 290979 ~ 310720 (+) False smu1b
trnak-uuu_21 other downstream 169840 317582 ~ 317654 (+) True trnak-uuu_21
TU461928 other downstream 185760 333502 ~ 348335 (+) False LOC113524533

Expression Profile