RNA id: XM_034301262.1


Basic Information

Item Value
RNA id XM_034301262.1
length 1412
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC117596367
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 112191 ~ 114613 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacagctacaaacacctcttcaacaaacacgtcttcaacaaacacctcttcaacaaacacgtcttcaacaaacacttcttcaacaaacacgacttcaacaaacacgacttcaGCAAACACTACTTCAACAAACACAACTACAACCACTCCTGCAGTAGCTGCAGTATTCAACTTGGTCTTTAGCATCAACGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTACACAGTTTGCAGCAAAAGCTACAAGTATCCGTACtcagcttgaATCAATTTACAGACAAATGTTCAAAAACTTCCTCCAGATGATAATTCATAGTTTCAGGAATGGTTCGATTGTGACAAATTCCAGCCTTGAATTTAGTGCCAATGGCACCATCCCAACTGACACCACAGTAAAAGATGCCCTTGTTAATGCGACTACCGCCAACTCAAGCTTGAACATTATTACAAATTCTATAAATGTCACCCGGGTTCCTGAGACAAACTCCTCTTCACCAAATGCAACTTCATCCACGAGCACAAATACAACCACGAGCACAAATACAACTACGAGCACAACTACAACCCCGAGCACAACTACAACCACTCCTTCAACGCCTGAAATTGCAGTATCAATTTTCAACTTGGTCTTTAGAATCAGTGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTACACAGTTTGCAGCAAAAGCTTCAATTATCCGTACTCAGGTTGAACCATTGTACAAGAAAGCCTTTAAAAACTTCATCATcatgaaaattataaaattcTGGAATGGCTCTATTGTGACAGAAAGCAACCTATTTTTCAGTCCTAATGGCCCAAATGTTACTGCGCCCAAGAAAAAACACTCTTCTCACTGGACTTCAAAACTTGAACTTTACTGTTGATCCAAACTCCATCAACGTCACCCAGACTCTTGGGAATTCCATGCCACCAGTGATTGCCAGCTCACTTTCCGTGATATGGATGTCTCTTCTATCACTTCTGCTTTCAGTGGCATTGCACTTCTAGCTCTAGACCTGATCAGAAAACATACAGAATCATAATTCCTAAGTTAAAGGGAATATGGGGAAAATGTTTCATTCTTATAAACAAAGATATCTTTACATAAGAAATTCTAATATCTTAAATTGTTGAAACTGGAGACTTAATGAGGGTTCTGATTTGCCTGAAAATTTCTAACACATTCTAACAGTCCTACAAGGATTTTGTTCGACTTATATTTAAATCCATTGAAATCTTTTTTAAACCATTGTGTAGTTCATAGTATAAATTAATGTTGTTCTATAGAGTATAATTTCTAAAGACTTGCTTGTATATGCAAACCTACATATAAGTTCTTTATATCAGTGtacaattattataaacattgttTGAAATAAAGCTTTGCACAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461779 lncRNA upstream 62571 47572 ~ 49620 (+) True G389450
TU461800 lncRNA downstream 35567 150180 ~ 181013 (+) True G389456
TU461811 lncRNA downstream 55944 170557 ~ 173094 (+) False G389456
TU461907 lncRNA downstream 195602 310215 ~ 328491 (+) False smu1b
TU461926 lncRNA downstream 224260 338873 ~ 346593 (+) True G389490
TU461929 lncRNA downstream 224987 339600 ~ 375948 (+) True G389492
XM_034301264.1 mRNA upstream 37737 69450 ~ 74454 (+) True si:ch211-217k17.11
XM_034301263.1 mRNA upstream 41466 69455 ~ 70725 (+) False si:ch211-217k17.11
XM_026910821.2 mRNA upstream 44289 60948 ~ 67902 (+) True ccdc86
XM_034301259.1 mRNA upstream 81641 26668 ~ 30550 (+) True LOC117596365
XM_034301227.1 mRNA upstream 106235 4072 ~ 5956 (+) True LOC117596358
XM_034301241.1 mRNA downstream 10503 125116 ~ 180742 (+) True LOC113524531
XM_034301261.1 mRNA downstream 31212 145825 ~ 147742 (+) True LOC117596366
XM_026910787.2 mRNA downstream 170034 284647 ~ 289660 (+) True rps6
XM_026910783.2 mRNA downstream 176366 290979 ~ 306559 (+) True smu1b
XM_026910784.2 mRNA downstream 179903 294516 ~ 306559 (+) False smu1b
TU461802 other downstream 55944 170557 ~ 174192 (+) False G389456
XR_004577502.1 other downstream 176366 290979 ~ 328479 (+) False smu1b
XR_004577501.1 other downstream 176366 290979 ~ 310720 (+) False smu1b
trnak-uuu_21 other downstream 202969 317582 ~ 317654 (+) True trnak-uuu_21
TU461928 other downstream 218889 333502 ~ 348335 (+) False LOC113524533

Expression Profile