RNA id: XM_034301289.1


Basic Information

Item Value
RNA id XM_034301289.1
length 2186
RNA type mRNA
GC content 0.47
exon number 7
gene id cnga1a
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 827839 ~ 832209 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTATTAAAGCCAAGTGCAAGAATATGAATCTACAAACATCAGCTGTGTCGTACTGAGAACATAAACCTGatagagagacagaaggtaAAAAACATAAAGCACCATGACGATCGTGACTACTGTGGGAATCTCAGTTCCTCCCCAAATGTCTCCAGTCATGGAGGAAGACCCTGAAGACAGCGAGGAAGATGTTCGTCCTTCTCCTGTCCCGCTAACACACTTTAACgtcaacaacagcaacaacaatgaagagcaagagaagaagaagaaagtgaaaaaggagaaaaaagagaaggagcAGAAGGAGCaggagaatgagaaagaaaaagagaaagagaaggaaaaagaaaaagagaaggacaaggacaaagagaaggagaaaaaagaaggGCCGAAGGAGGTGTTTGTGATTAACCCGGCCAGTAACCTGTATTACCAGTGGATCCTTCTCATCACGTTGCCCGTCATGTACAACTGGACCATGATCATTGCGAGAGCCTGCTTTGAAGAACTGCAGCATGAATATCTGATCACATGGTTCTTCCTTGACTACATCTGTGATCTCCTTTATCTGGCTGATATGGCCTTCAGAACAAGGACTGGCTACCTCGAGCAGGGATTGCTTGTCAAGGATAAGAAACTCCTCATCAAGCACTACACGGACAGCCCTCAGTTCCGGCTCGACGTCATCTCGATGATACCCACCGACGTGCTGTACTTCATCCTGGGACTGGACTACCCTGAGATCCGCATCAACAAGCTACTACGCATCAACCGCATGTTTGAGTTCTTTGACCTTTCACAGACCATGACTAACTATCCTAACATCTTCCGCATCTGCACTTTGGTCATGtatatcatcattatcattcaCTGGAATGCTTGCCTCTACTTCTCCTTCTCCAAATCTATTGGTTTTGGTTCAGATCCCTGGGTCTACCCGGCGCTCACTGAGCCTGAGTTTGGGGACTTGTTGAGGAAGTACTCTTTCAGCCTCTACTGGTCCACGCTGACTCTCACCACCATCGGGGAAACACCGTCTCCTGAGCTGGACTCTGAGTTCTTCTTCCATGTCGTAGACTTCTTGGTTGGTGTCCTGATCTTTGCCACCATTGTTGGGAATATTGCCACAATGATCTCCAACATGAATGCGGCCCAAGCCCAGTTTCAGGCGCGTATCGACAGCATCAAGCAATACATGCATGTGCGGCATGTCAGCAAGGACCTGGAAAAGCGAGTCATCAAGTGGTTCGACTATCTGTGGACCAATAAGAAGGCGCAAGATGAAAGGGAGGTACTCAGGTACCTGCCAGACAAGCTGCGAGCAGAGATTGGTATGAACGTTCACCTGGATACGTTGAAGAAGGTGAGGATCTTCGCAGACTGTGAAGCGGGACTGCTAATTGAGCTCATTCTTAAATTACAGCCTCAGGTGTTTAGCCCTGGTGATTACATCTGCCGCAAGGGTGACATCGGCCGGGAGATGTACATCATCAAGGAGGGAAAACTGGCCGTGGTGGCTGATGATGGTGTCACAGAGTTTTGTGTTCTGGGTGACGGAAGTTACTTTGGTGAGATTAGCATCCTGAACATTAAAGGCAGCAAAGCAGGAAACCGCAGGACAGCTAACATCCGCAGCATCGGATACTCAGATCTCTTCTGCTTGTCTAAGGATGATTTAATGGAAGCTCTGACCGAGTACCCTGAtgccaaaaacatgctggaGGAAAAGGGGAGGCAGATCCTTATGAAAGATGGCCTGATTGAAACGGACCTGACCAAACTGAAGCCAGACCAGAAGGACCTTGAGGACAGAGTGAACCGCATTTACAGCACCATGGAGCTGATGCAGGCCAAACTGAAGAAACTGCTAGCGGATTAtgagaaaactgagaaaaatcTGAAAGAGCGCATCGCTCAGATAGAACGCTATGCTGGGGAGGAGGTggaagaagaggatgaggatgaagacaAGGGGCAGAAGGACGTGAAGGAAGAGGCTCCACCAGAGCAAGTcaaggaggagaagaaagaggaggacAAGTAGGAGGTCTGAAGGGTTGTGGTCTTCATTATCATTGTTGAACCAAAATGTGTCCCTGTCAGAAACAGTTCCAAGTGGAAGCCTGTTAGAAGAGTAAGAACTTTTAACCtcctaaagaacccttgaagaatctttttttt

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K05391 CNGC; cyclic nucleotide gated channel, plant

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461982 lncRNA upstream 33504 787521 ~ 794335 (+) True G389524
TU461961 lncRNA upstream 86533 736859 ~ 741306 (+) True G389515
TU461946 lncRNA upstream 96674 612303 ~ 731165 (+) True G389506
TU461943 lncRNA upstream 169101 604419 ~ 658738 (+) True G389505
TU461762 lncRNA upstream 318108 444407 ~ 509731 (+) True G389441
XR_004577511.1 lncRNA downstream 106457 938666 ~ 939174 (+) True LOC117596382
TU461729 lncRNA downstream 106839 939048 ~ 950362 (+) False G389438
TU461721 lncRNA downstream 113911 946120 ~ 950362 (+) False G389438
TU461723 lncRNA downstream 116801 949010 ~ 950362 (+) False G389438
TU462012 lncRNA downstream 148214 980423 ~ 998703 (+) True G389542
XM_026945203.2 mRNA upstream 1103 823881 ~ 826736 (+) True enam
XM_034301309.1 mRNA upstream 1103 823881 ~ 826736 (+) False enam
XM_026945207.2 mRNA upstream 5860 813572 ~ 821979 (+) True scpp5
XM_034301310.1 mRNA upstream 60079 764306 ~ 767760 (+) True odam
XM_034301314.1 mRNA upstream 64887 758772 ~ 762952 (+) True scpp9
XM_026945196.2 mRNA downstream 19124 851333 ~ 877393 (+) True tacr3a
XM_034301308.1 mRNA downstream 74672 906881 ~ 916289 (+) False bdh2
XM_034301306.1 mRNA downstream 74673 906882 ~ 916289 (+) False bdh2
XM_034301307.1 mRNA downstream 74676 906885 ~ 916289 (+) True bdh2
XM_034301305.1 mRNA downstream 74676 906885 ~ 916289 (+) False bdh2
TU461983 other upstream 22623 804360 ~ 805216 (+) True G389525
TU461981 other upstream 27273 790488 ~ 800566 (+) False G389524
TU461975 other upstream 30510 790488 ~ 797329 (+) False G389524
TU461976 other upstream 30510 790488 ~ 797329 (+) False G389524
TU461974 other upstream 30510 793553 ~ 797329 (+) False G389524
TU461743 other downstream 102720 934929 ~ 950407 (+) False G389438
TU465523 other downstream 5394148 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 5394148 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 5783750 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 5783750 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile