Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034301307.1 |
| length | 997 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 12 |
| gene id | bdh2 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047622.1 |
| NCBI id | CM018568.1 |
| chromosome length | 15845479 |
| location | 906881 ~ 916289 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0019290 | siderophore biosynthetic process | biological_process |
| GO:0042168 | heme metabolic process | biological_process |
| GO:0042541 | hemoglobin biosynthetic process | biological_process |
| GO:0055072 | iron ion homeostasis | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | molecular_function |
| GO:0003858 | 3-hydroxybutyrate dehydrogenase activity | molecular_function |
| id | description |
|---|---|
| K00019 | E1.1.1.30, bdh; 3-hydroxybutyrate dehydrogenase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU461982 | lncRNA | upstream | 112550 | 787521 ~ 794335 (+) | True | G389524 |
| TU461961 | lncRNA | upstream | 165579 | 736859 ~ 741306 (+) | True | G389515 |
| TU461946 | lncRNA | upstream | 175720 | 612303 ~ 731165 (+) | True | G389506 |
| TU461943 | lncRNA | upstream | 248147 | 604419 ~ 658738 (+) | True | G389505 |
| TU461762 | lncRNA | upstream | 397154 | 444407 ~ 509731 (+) | True | G389441 |
| XR_004577511.1 | lncRNA | downstream | 22377 | 938666 ~ 939174 (+) | True | LOC117596382 |
| TU461729 | lncRNA | downstream | 22759 | 939048 ~ 950362 (+) | False | G389438 |
| TU461721 | lncRNA | downstream | 29831 | 946120 ~ 950362 (+) | False | G389438 |
| TU461723 | lncRNA | downstream | 32721 | 949010 ~ 950362 (+) | False | G389438 |
| TU462012 | lncRNA | downstream | 64134 | 980423 ~ 998703 (+) | True | G389542 |
| XM_026945196.2 | mRNA | upstream | 29492 | 851333 ~ 877393 (+) | True | tacr3a |
| XM_034301289.1 | mRNA | upstream | 74676 | 827839 ~ 832209 (+) | True | cnga1a |
| XM_026945203.2 | mRNA | upstream | 80149 | 823881 ~ 826736 (+) | True | enam |
| XM_034301309.1 | mRNA | upstream | 80149 | 823881 ~ 826736 (+) | False | enam |
| XM_026945207.2 | mRNA | upstream | 84906 | 813572 ~ 821979 (+) | True | scpp5 |
| XM_034301290.1 | mRNA | downstream | 480 | 916769 ~ 925965 (+) | True | si:dkey-162b23.4 |
| XM_034301292.1 | mRNA | downstream | 480 | 916769 ~ 925965 (+) | False | si:dkey-162b23.4 |
| XM_034301291.1 | mRNA | downstream | 1838 | 918127 ~ 925965 (+) | False | si:dkey-162b23.4 |
| XM_034301303.1 | mRNA | downstream | 14732 | 931021 ~ 936399 (+) | True | LOC117596376 |
| XM_034301032.1 | mRNA | downstream | 25672 | 941961 ~ 950824 (+) | True | LOC113545722 |
| TU461983 | other | upstream | 101669 | 804360 ~ 805216 (+) | True | G389525 |
| TU461981 | other | upstream | 106319 | 790488 ~ 800566 (+) | False | G389524 |
| TU461975 | other | upstream | 109556 | 790488 ~ 797329 (+) | False | G389524 |
| TU461976 | other | upstream | 109556 | 790488 ~ 797329 (+) | False | G389524 |
| TU461974 | other | upstream | 109556 | 793553 ~ 797329 (+) | False | G389524 |
| TU461743 | other | downstream | 18640 | 934929 ~ 950407 (+) | False | G389438 |
| TU465523 | other | downstream | 5310068 | 6226357 ~ 6239070 (+) | False | lrba |
| TU465524 | other | downstream | 5310068 | 6226357 ~ 6239070 (+) | False | lrba |
| XR_004577479.1 | other | downstream | 5699670 | 6615959 ~ 6618682 (+) | True | LOC113544406 |
| XR_003404500.2 | other | downstream | 5699670 | 6615959 ~ 6618682 (+) | False | LOC113544406 |
