RNA id: XM_034301310.1


Basic Information

Item Value
RNA id XM_034301310.1
length 972
RNA type mRNA
GC content 0.54
exon number 11
gene id odam
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 764306 ~ 767760 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGTCACCGGAGTGTGTATGACGTCGTGACCACACGGCGCCTCGGCGTGTCGGATAAGAGGCACGGAGACGCTTTAAAAAGCCAAAGCCAGAGCGACGTTCTCACAGCTCTCATCTCCATTCCACAGTGAAGTTGGACACCATGAAGCTCCAGACCTTCATCTTTTTAGCTGTTCTTCTCAGCTTTTGCTCTGCAGTTCCGATCCTCCGCCAGCAGCTTGGAATAATTGCCAGTAACAGCAATGAGATTGTGCGTCTCCCAGGACTCACGCTCTCCGGCGTCGGTTTGGGACAAACACGGGTTCAGGGAACTCCGTTTCTCTCTCCGTTCCTGATCCAGCCCCAGCCTGATTTCCTGCTGCCCCCTCAGGTGGTGAATTTCGGACCTCAGGTTCCGGGACAGTTCCTGCCCCCACAACAGAACCTGCCCCCATTTCTACTGCCCTCCCTTCAGCAGGAGCAGCCCACAGGCCCAATCAACCCCAACAACCCTCCCCCCAACACCCAGGACCCCGCCCAGGTGGTTCCTCAGTACTTCCCGTTCCCTCAGGCACCAggaggacagGGTTTTCCGTATTATATGAGTTACGGCTTCCCTCCAAGAAACACGCTGCTCAAAGTCCCGcccaatcagaacacagcaaATCAAAATGCGGCCAATCAGAACCCAGTCGGACCCACTATAGTCCCTCAGCCTGCGCAGAATAACGGGAAGGTGTTGGAGCCGTGGCGTATGACTCCGCCCCCTGATAACCGTGGAGATCGTCCTGGGCGTGGCGTAGAGGGgGATCCTGCGTTCCCGTTTTTCCAGCCGTAGATCCGCAGAGAATCGTgtGTCGGAGTGAAAGCACTCAGAGAgcttaaacatcagaatgtcaCGCTTCTGTCTGACACCGTCATGAATCCAGCCACGTAATTGTTCATGTAACTGTTATAACGACTCTTATTACTCGACATCACCTGTATTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461961 lncRNA upstream 23000 736859 ~ 741306 (+) True G389515
TU461946 lncRNA upstream 33141 612303 ~ 731165 (+) True G389506
TU461943 lncRNA upstream 105568 604419 ~ 658738 (+) True G389505
TU461762 lncRNA upstream 254575 444407 ~ 509731 (+) True G389441
TU461740 lncRNA upstream 263151 438504 ~ 501155 (+) True G389438
TU461982 lncRNA downstream 19761 787521 ~ 794335 (+) True G389524
XR_004577511.1 lncRNA downstream 170906 938666 ~ 939174 (+) True LOC117596382
TU461729 lncRNA downstream 171288 939048 ~ 950362 (+) False G389438
TU461721 lncRNA downstream 178360 946120 ~ 950362 (+) False G389438
TU461723 lncRNA downstream 181250 949010 ~ 950362 (+) False G389438
XM_034301314.1 mRNA upstream 1354 758772 ~ 762952 (+) True scpp9
XM_026945199.2 mRNA upstream 8647 751135 ~ 755659 (+) True si:dkey-22i16.9
XM_034301312.1 mRNA upstream 14411 746707 ~ 749895 (+) True LOC113545734
XM_026945202.2 mRNA upstream 36389 724127 ~ 727917 (+) True LOC113545725
XM_034301029.1 mRNA upstream 198343 564837 ~ 565963 (+) True LOC113545735
XM_026945207.2 mRNA downstream 45812 813572 ~ 821979 (+) True scpp5
XM_026945203.2 mRNA downstream 56121 823881 ~ 826736 (+) True enam
XM_034301309.1 mRNA downstream 56121 823881 ~ 826736 (+) False enam
XM_034301289.1 mRNA downstream 60079 827839 ~ 832209 (+) True cnga1a
XM_026945196.2 mRNA downstream 83573 851333 ~ 877393 (+) True tacr3a
TU461928 other upstream 415971 333502 ~ 348335 (+) False LOC113524533
XR_004577502.1 other upstream 435827 290979 ~ 328479 (+) False smu1b
trnak-uuu_21 other upstream 446652 317582 ~ 317654 (+) True trnak-uuu_21
XR_004577501.1 other upstream 453586 290979 ~ 310720 (+) False smu1b
TU461802 other upstream 590114 170557 ~ 174192 (+) False G389456
TU461980 other downstream 19616 787376 ~ 794335 (+) False G389524
TU461975 other downstream 22728 790488 ~ 797329 (+) False G389524
TU461976 other downstream 22728 790488 ~ 797329 (+) False G389524
TU461981 other downstream 22728 790488 ~ 800566 (+) False G389524
TU461974 other downstream 25793 793553 ~ 797329 (+) False G389524

Expression Profile