RNA id: XM_034301379.1


Basic Information

Item Value
RNA id XM_034301379.1
length 3445
RNA type mRNA
GC content 0.48
exon number 22
gene id ppp1r21
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 2415080 ~ 2429990 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTGCTTGGCTGTTGAGCTAGTCAGCTTTAGCTAGCTACAATTCTTCGGTTAGGATTTCGAGCTAGGGTAGATGTAGATATTACTAAAATATTATAACTCGTAAATCGTAAATTAGTGTACAGACTGGCTCGAGGGGATGTTGTGATATTTTTCAAGAGGATGtcattgatttaaaatgttaaatatttattttatcgttagctagctagctcgtTTAGCTAATGAACCGGTTAGTCCTATGAGCTGACGAGCTCGTGTTGTTTTATAGATAATTATTGTTATCatctatttatctttgtttttgaCGAAAAAATGGTTTATTGACAGTTTTTCTAGCAAACTATATACTCTTTCTGGCTAATACTGCGTTTTTATTAGTCAGTGTTTGCTTAAAGCTTCGAGTTTGCTATAGCAGAACCATACacaatatctaatatctaatatataacataaatatataataaatatataataataataagcattaaTTAGTGTTAGTGGAGGTGAtttagtttgtttttctcatcatcATGGCTGCAGAACTTCAAGCCAAATACACCAAACTGGCTCAAGAGTACTCAaagctCAGAGCACAGAATCAGGTCCTGAAGAAGGCGGTGGTGGACGAGCAAGCCAGTTCCAACTCCCTGAAGGAGGAGGTGAAGCAGCGTGAGCAGAGCCTGCGTAAAGCCGAGCAGGAGATGGACAGCCTGAGCTTCAGGAACCAGCAGCTGGCCAAACGAGTGGAGCTGCTGCAGGAGGAGCTGCAGGTCACCGAGGCCAGGAGTAAAAAGGGCAAGAGTAAAGGAGATTCACCGTCCCAGCCCAGCTACCAGACGCAGAGTGTGTTTGACGAAGACCTGCAGAAGAAGATTCAGGAGAACGAAAGGCTTCACATCcagTTCTACGAGGCGGACGAGCTGCACCGTCAGCAGGAGGCTCGGCTCCGAGAGAGACTGGAGCAGCTGGAGAAAGACGCCGAGCAGCACCAGGCTGTGGTGGACGGTCTCGCCTCCAAATACATGGACAACATCGAGAAACTACAGAGCGACAAAGCTCGCCTAGAGGTTAAAGTTCAGACACTGGAGAGAGAGGCAAAGGAGTGCCGACTCAGGACCGAGGAATgCCAGCAGCAACTGAGGAAATATCAGACAGAGCTGAGCACTCAGCTGAAACACAACAGCAGTGTGATCCAGGAGAAAGTGCCCTTCAACGACACCAAATACAGTGGCTACAACAGCTTAAACGTTCCCACACACAACAGAAGACATCAGCTGAAAGCTCGAGATGCAGCAGGACAGGCCGTGGGCTTCGTGCAGGATCTCGTCTCTGCTCTCCTCAACTTTCACTCGTACACAGAGCAGAGGGTCCACATTTACCCCCTGGACTCATCTATCGAACCCGTCTCACCTCTCAACcagaagTTCTCTCAGTATCTGCATGAGAACGCTGCCTATGTGCGCCCCCTGGAGGAAGCCATGCTGCAGCTGCATCAGAGCATCACAGAGGACACGGTTACAGTATTGGAGACGGTGGGGAAACTGCAGGACTTTTCCAAATCCTTCTCCACTTACACAAGCTTTCTGCAGAAGATCCTGCCTTATCAGCTAAAAAGTCTGGAGGAAGAGTGTGACGTCCCTCTGTGCACAGCGTCTTTGAGCGCTAAGAACCGCGAGCTACAGAGCGATATGAAAAGAGTGACTGCTGTGTTTGAGAAGCTGCAGAACTACATCAGTCTCTTGGCCTTACCTAGTGTGCGATTGGATGCCATGCCTCAGAGCAGCTCCAGCGCAGTCTTCACCCAGCTTGCTGCTTGTTTACACGGCCTGCACGATGCCACCAAGGAGCTGTCCAAGCACTACAGTCAGAAGGTGGCCCTTGAGCAGGAGCTTCCTAACATCACTCAGAAGCTGCGCACCACTAACGAGTGCTTACTCTCCTCCCTGGCCTCCCTCACCAACACCACAAACAAGATTGCAACGTTCTTCAGCAACAATCTGGACTTCTTCACCTCGTCGGCTGGGTACGGGCCCAGAGGCGGAACCGGAAGCCTCAACCCACAGCAGGCACACAGCATGCTCAGTAACAAAAAGCACGCGTCCGACTACATGCTCACACTCAGGAGGGCGCGTCCTGAGTCTGTTCCCTACACAGAGGCACTGTCGAACCGGCGCATCCTCACCAGCTCCACAGAGAGCAGAGAGGGTCTCATGCAGCAGGTGCAGCAGAGTCAGGAGAAAATCGCTCGTCTGGAGCAGGAGAAAGAGCACTGGCTGCTGGAGGCTCAGCTGGGCCGAGTACGACTGGAGAAGGAGACTCAGCGCATAGCCGAGCTGGAGGCCAGACTCTCCTCAGCCCTCGGGAACGGCGTCgctgcacccacacacaccgaCTCTGCCTCTACAGGACCAGCTGAGGCAGAAAAAGACAAGATAACGAGCAGAGAGGCGTCTCAGAGCACCAGTTTGGTTGGAATGCTTACCACAACCCCGACTAATGAGAGTGTTGGAGATGAAGAGTCTCGGGAACACCTGATCAAATCCCACTACATGGCTCGAGTGGCCGAGCTCACCACGCAGCTGCAGATGTCCGACAGCAAGGCGGTGCACTTTTACGCCGAGTGCCGAGCGCTGGCGAAACGTCTGGCCATCGCAGAGAAATCTCGCGAGACTCTCACAGAGGGCATGAAGCAAGCCAATCAGAACATCACGTCCCTGCAGGATGAACTGAGCACGACTAAGAGGAGCTACGAGGACCAGCTGAGTATGATGAGCGATCATCTCTGCAGCATGAACGAAACCCTGAGCAAACAGCGCGAGGAGATCGACACGCTCAAACTAGGAAACAAGGGAAACTCGAAGAAGAACAAGGGTCGGTAGTTTGGTATGCAGTCATTCAGCATCGCTGTGAATGAAGGAGGATGTACTGGGACCAGACAGAtttcactaaacacacacacacacacacacacacagatacggCAGAGACACATGGAGACATGACGTCCTGCTCTGCTCAGACATAACTGACCAGACATGACTTGGTTCATTcgttagtttttttgttttttttttaaacaacagctTGTTTGAGTGTGAGTGGAAAACTGACATTTCAACACCTTTATCTTCTGCTATCTTGCCATTTTTCCAAGCAGACAGAATGTTAgtgatttttacaaattaaaacaaagacCTAAAGTGTGCAGATCGGCTGAACAATCATGTACTGGTCATATCGCTATAAGTCTAATTTTGACTGCTTGACATTTCATCTGACCGTTTCTTTATCACATGAGTATCAAATTTTcctacttcctgtttgaagaCCCTGATTAGTTTCCATATTTACTGAGGACATTAAAACGTGCACATAAATTGTGCGTATATCCTTAACATTATACTATTCTGGTATAGGAAATAACATTAAAGGTAcggtcagtt

Function

GO: NA

KEGG:

id description
K17562 PPP1R21, CCDC128, KLRAQ1; protein phosphatase 1 regulatory subunit 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463039 lncRNA upstream 46814 2364554 ~ 2368266 (+) False LOC113545784
TU463040 lncRNA upstream 46814 2364554 ~ 2368266 (+) False LOC113545784
TU463037 lncRNA upstream 58286 2356333 ~ 2356794 (+) True G390411
TU462678 lncRNA upstream 469625 1944549 ~ 1945455 (+) True G390077
TU462598 lncRNA upstream 558179 1856490 ~ 1856901 (+) True G390023
TU463087 lncRNA downstream 76075 2506065 ~ 2506498 (+) True G390456
XR_004577500.1 lncRNA downstream 706638 3136628 ~ 3171123 (+) True LOC117596362
TU463627 lncRNA downstream 969191 3399181 ~ 3400825 (+) False LOC113545782
TU463846 lncRNA downstream 970938 3400928 ~ 3401783 (+) True G391143
XR_003404650.2 lncRNA downstream 1719045 4149035 ~ 4175902 (+) False LOC113545714
XM_026945386.2 mRNA upstream 1965 2388831 ~ 2413115 (+) True rtn4b
XM_034301230.1 mRNA upstream 1965 2388831 ~ 2413115 (+) False rtn4b
XM_026945387.2 mRNA upstream 1965 2388831 ~ 2413115 (+) False rtn4b
XM_026945388.2 mRNA upstream 1965 2388845 ~ 2413115 (+) False rtn4b
XM_026945389.2 mRNA upstream 1965 2388846 ~ 2413115 (+) False rtn4b
XM_026945363.2 mRNA downstream 2873 2432863 ~ 2438882 (+) True zgc:64201
XM_034301144.1 mRNA downstream 863201 3293191 ~ 3333177 (+) True LOC113545751
XM_034301145.1 mRNA downstream 863201 3293191 ~ 3333177 (+) False LOC113545751
XM_034301147.1 mRNA downstream 863201 3293191 ~ 3333177 (+) False LOC113545751
XM_026945283.2 mRNA downstream 863201 3293191 ~ 3333177 (+) False LOC113545751
TU461743 other upstream 1464673 934929 ~ 950407 (+) False G389438
TU461983 other upstream 1609864 804360 ~ 805216 (+) True G389525
TU461981 other upstream 1614514 790488 ~ 800566 (+) False G389524
TU465523 other downstream 3796367 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 3796367 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 4185969 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 4185969 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 4185969 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile