RNA id: XM_034301390.1


Basic Information

Item Value
RNA id XM_034301390.1
length 8334
RNA type mRNA
GC content 0.52
exon number 36
gene id LOC113544387
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8496076 ~ 8583090 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctctctctctctgaatggtgatgctgctgctgctacaggGACGGTAGGTTGTGGCCACAGCGCTCATTCCGCCTTCCTCGCCCAGCAGCTCTCTGTATCTGCGGTGAAGTTTGGGAGCAGTTCTTCACTAGGTGTTTTCTGAAAAGGGGCTGATGAGTAGATACAAGCTGTGAGGGCTCAAAATGACGTCAGTAGCCGCCGATTATGACCACATGGAGATCCAGCAGCAGTACAGCGACGTCAACAACCGCTGGGACGTGGATGAGTGGGACAATGAGAACAGCTCTGCCCGTCTGTTTGAGCGCTCCCGCATCAAGGCCCTTGCAGATGAGCGAGAAGCAGTGCAGAAGAAGACCTTTACCAAATGGGTGAACTCCCACCTGGCCCGAGTCTCCTGCCGCATCACAGACCTCTACATGGATCTGAGGGACGGCCGCATGCTCATTAAGCTCCTGGAGGTGCTGTCTGGAGAGAGACTGCCGAAGCCCACAAAAGGCCGTATGAGAATTCACTGTCTGGAGAATGTGGACAAAGCTCTGCAGTTCCTCAAAGAACAGCGCGTTCACCTCGAGAACATGGGCTCCCATGACATTGTTGATGGCAACCACCGCCTCACACTGGGCCTCATCTGGACCATCATTCTGCGCTTCCAGATTCAGGACATTAGCGTTGAGACAGAAGACAGCAAGGAAAAGAAGTCTGCCAAGGATGCTCTGCTTCTGTGGTGTCAGATGAAGACTGCaggTTATCCAAATGTCAACATTCACAATTTCACCACGAGCTGGAGAGACGGCATGGCCTTCAACGCACTTATTCACAAACACAGgccTGACCTGATAGACTTTGACAAGCTGAAGAAATCCAATGCCCACTATAATCTGCAGAATGCCTTTAACCTGGCTGAACAGCACTTGGGCCTCACAAAGCTGCTGGACCCAGAAGATATCAGCGTTGACCATCCTGATGAAAAGTCAATCATCACCTATGTTGTCACTTATTATCACTACTTCTCCAAGATGAAGGCACTGAAAGTGGAAGGCAAACGTATTGGAAAGGTGCTAGATAACGCTATTGAGACTGAGAAGATGATCGAGAAGTACGAATCTCTGGCCTCGGATCTTCTGGAGTGGATTGAACAGACCATCATTATCCTCAATAATCGCAAGTTTGCCAACTCTCTGGTTGGAGTGCAGCAGCAGCTTCAGGCCTTTAACACCTACCGAACAGTGGAGAAACCTCCGAAGTTTACAGAAAAAGGCAACCTGGAGGTCCTGCTGTTCACCATTCAGAGCAAAATGCGAGCCAACAATCAGAAAGTCTACATACCTCGAGAGGGAAAACTCATATCAGACATCAACAAGgGATGGGAGAGGTTGGAGAAGGCGGAGCATGAGAGGGAACTGGCTCTGAGGACGGAGCTGATTCGTCAGGAGAAGTTGGAGCAGCTAGCCCGCCGATTCGACCGCAAGGCAGCCATGAGGGAGACCTGGCTAAGCGAGAACCAGAGACTCGTCTCACAGGACAACTTTGGTTTTGATCTGCAAGCCGTGGAGGCGGCCACCAAGAAGCACGAAGCCATCGAGACGGACATCGCGGCGTACGAGGAGCGTGTGCAGGTGGTAGTGGCTGTAGCCTCAGAGCTGGAGGCGGAGAATTACCATGACATCAAGCGCATCACGGTCCGCAAAGACAACGTTCTACGGCTGTGGGACTACCTCCTGGAGCTCCTGAGAGCTCGACGCCAAAGACTGGAGCTCAACCTGGGCCTACAGAGAGTCTTCCAGGAGATGCTCTACATCATGGACTGGATGGATGAGATGAAGATGCTGCTGTTGTCTCAGGACTATGGAAAACATCTGCTTGGTGTAGAGGACCTGCTGCAGAAACACGCTCTAGTGGAGGCTGACATTGCCATACAGGCTGACCGTGTCAAATCCGTCAATGCCAACGCACAGAAGTTTGCTGATGACTCTGACGGCTACAAGCCATGTGACCCACAGGTGATCCGTGACCGCGTGGCCCACATGGAGTTCTGCTACCAGGAGCTGACACAGCTGGCTGCCGAGCGGCGCGCACGTCTGGAAGAGTCACGTCGCCTCTGGAAATTCTTCTGGGAGATGGCTGAGGAGGAAGGCTGGATCCGTGAGAAGGAGCAGATTCTGTCATCAGATGACTGTGGCAAGGACCTGACAGGGGCACTGCGTCTGCTCAGCAAGCACAAGGCCTTTGAAGATGAGAAGAGCGGGCGTGCCGGACACCTCCAGCAGACGGTGCACCAGGGCGAGGAGCTGGTAGCCGCTGGCCACTTCGGTGCCGACAAGATCAGTCAGCGTATCGCCGATGTCCAGGAACAGTGGGTGGCGCTGGAGCAGCTGTCGGCAGCACGCAAGGTCCGTCTGCAGGAGGCCTGCGCCCTGCACCAGTTCCAGGCTGACGCCGATGACATGGATGCCTGGATGCTGGACGCATTGCGCATCGTGTCCAGCACCGATGTGGGCCATGACGAGTTCTCAGCGCAGGCGTTGGTTAAGAAGCACAAGGACGTGGCCGAGGAGATTGCCAGCTACAGACCAGTGCTGGATGCCCTTCACGAGCAGGCCAAAGCGCTACCTGAAGAACAGGCACGCTCAGCAGACGCAAGTGGGCGTCTAGCAGGCATCGAGGAGCGATACAAGGAGGTGGTTGAACTGACCAGGCTGAGAAAGCAGGCACTTCAGGACGCACTGGCATTGTACAAGATGCTGAGCGAGGCCGATGCCTGTGAGCTGTGGATCGACGAAAAGGAGCAGTGGCTTAATGGAATGGAGATCCCAGAGAAACTGGAGGATTTGGAGGTGATTCAGCACAGATTTGAGAGTCTGGAGCCAGAGATTAACAGCCAGGCTTCTCGGGTGGCCGTGGTGAACCAGATTGCCCGCCAGCTTATCCACAGTGGGCACCCTAGTGAGAAAGAGATCAAAACCCAGCAGGACAAGCTCAACACCAGGTGGAGCCAGTATCGTGACCTGGTAGACCGGAAGAAGGACGCTCTCAACAGAGCTCTGGGAGTGCAGAACTACTACCTTGAATGCAATGAGACCAAATCCTGGATTCGCGAAAAGACCAAGGTGATTGAGTCCACCCAGGATCTGGGCAACGATCTGGCCGGTGTCATGGCACTTCAGCGCAAACTGACTGGCATGGAGCGAGACCTGGTTGCTATAGAGGACAAACTGGGTGACCTAGGGAAGGAGGCGGACCGATTGGCCGAAGAGCATCCAGACCAGGCTCCTGGCATCAAGGGCCATTTGGGTGAGATCAAAGATGTGTGGGAGGAGATGAAGGGGACCATGCGTGCTCGTGAAGAGTCCCTGGGTGAGGCCAGCAAGCTCCAGCAGTTCCTCAGGGAGCTGGATGACTTCCAGGTGTGGCTGTCACGCACCCAGACCGCCGTGGCTTCTGAAGACATGCCCAACACTCTGGCTGAGGCCGAAAAGCTTCTGGCCCAGCATGAGGGAATCAAGAATGAGATCCGTAACTACAAGGAGGACTACCAGAAAATGCGCGACATGGGCGAGACAGTGACCCAAGGCCAAACAGATGCCCAGTACATGTTCCTGAGTCAGAGGCTGAAAGCACTGGACACTGGCTGGAACGAGCTCCAGAAGATGTGGGAGAACAGGCAGAAACTCCTGTCGCAGTCTCATGCCTATCAGCTCTTCCTCCGGGATACCAAGCAGGCTGAGGCTTTCTTGAACAATCAGGAATATGTATTGGCCCACACGGAGATGCCGGCTACCCTTGAAGGGGCAGAAGGGGCTATCAAGAAGCAGGAAGACTTCATGACTACCATGGACGCCAATGAGGAAAAGATTAATGGCGTGGTGGAGACGGGCCGCAGGCTGGTCAGTGATGGGAACATTAGCGCTGAACGTATCCAAGAGAAAGTGGTCTCTATTGAGGAAAGgcatAAGAAGAATCGTAAGGCAGCCAGTGAGCTTCTCACAAAGCTGAAAGATAACCGAGATCTCCAGAGGTTCCTCCAGGACTGTCAGGAGTTGTCCTTGTGGATCAGTGAGAAGATGTTAACAGCACAGGACATGTCCTATGATGAAGCACGCAACCTGCACAGCAAGTGGCTCAAGCACCAGGCCTTCATGGCAGAACTGCAGTCCAACAAAGAGTGGCTGGAGAAAATTCAGAAGGATGGCACAGCATTGGTGGCCGAGAAGCCAGAGACTGAGGCAGTGGTGAAGGAGAAACTGGAGTCTCTGAAGAAGATGTGGGATGAGCTGGAGTCGACAACCCAGACCAAGGCCCAGTGCCTGTTTGACGCCAACAAGGCCGAGCTGTTCACGCAGAGCTGCGCTGACTTGGATAAGTGGCTCTCTAGCCTGGAGGGCCAGATACAGTCAGATGACTTCGGCAAAGACCTGACCAGTGTCAACATCTTCTTGAAGAAACAGCAGATGCTAGAAAGCCAGGTGGAAGTGAGGCAGAAGGAGGTGGAGGAGCTGCGCACGCAGGCCCAAGCACTCAGCCAGGAGGGCAAGGGGTCCGACGAAGTGGACGGCCTGCGCTGTAGGGTGGAGAAAAAGTTCCACGAGCTGCAGGAGCCACTGAAGAAACGCCGGAGCAACTTGATGGCCTCGCGTGAGATCCACCAGTTCAACCGGGATGTGGAGGATGAGATTctcTGGGTTGAGGAGAGAATGCCAATGGCCACATCTACAGAACATGGCAATAATCTACAAACTGTTCAGCTGCTCATTAAGAAGAACCAGACCCTCCAAAAGGAGATCCAGGGTCACCAGCCACGTTATGATGACATTTTTGAGAGGAGCACGCACATCCTGAAGGACAACAGTCCTGTCAGTGCAACAATCCGCCAGCGGTTAGATGAGCTAAAGCGGCTCTGGCACTTGATCCAAGAGGAAGTGGAAAAACGCCACAGGCGCCTAGAGGAAGCACACAAAGCTCAGCAATACTACTTTGATGCAGCGGAGGCTGAGGCCTGGATGAGCGAGCAGGAGCTGTACATGATGTCTGAAGAAAAGGCAAAGGATGAGCAGAGCTCTGTGGCTATGCTGAAGAAGCACCAGATCCTGGAGCAGGCGGTGGAGGACTACGCTGAGACAGTGCACCAACTCTCTAAAACCAGCAGGGCCTTAGTGGCTGCTGGACACCCTGAAAGTGAGAGAATCAGCATGCGACAGTCTCAAGTGGACAAGCTGTATGCCGGTCTGAAGGACCTGTCTGAAGAAAGACGTGGGAAGCTCGACGAGAGATCCTGTCTGTTCCAGCTGAACCGGGAGGTGGATGATTTAGAGCAGTGGATCGCGGAGAGAGAGGTGGTGGCAGGTTCTCACGAGCTCGGCCAGGACTACGAACACGTCACTatGCTGCAGGAGCGTTTCCGAGAGTTTGCCCGTGACACAGGAAACATCGGCCAGGAGCGTGCTGACGCAGTCAATAAAATGGCAGACGACCTGATCAACTCGGGTCACGCAGACGCCGCCACCATCGCCGAGTGGAAGGATGGGCTGAACGAGGCTTGGGCCGACCTGCTGGAGTTAATCGACACTCGTACGCAGATCCTGGCTGCCTCCTATGAGCTGCACAAGTTCTACCACGACGCCAAGGAGGTGCTTGGACGCATCCTAGACAAACACAAGAAGCTCCCAGAAGAGTTGGGCAGAGACCAGAACACCGTAGAGGCACTGCAGAGAATGCACACCACCTTCGAGCATGACATACAGGCTTTGGGAACACAGGTTAAGCAGCTGCAGGAGGACGCGGCGCGTTTGCAGTCAGCCTATGCAGGAGATAAGGCTGAGGACATCCAGAGGCGTGAGGCGGAGGTGCTAGAGGCCTGGCGTTCTCTGCTGGAAGCGTGCGACGGCCGCCGTGTGCGTCTAATCGACACCAACGACAAGTTCCGCTTCTTTAGCATGGTGCGTGACCTTATGCTTTGGATGGAGGATGTCATCCGGCTCATTGATGCACAGGAGAAACCCAGGGATGTTTCATCCGTGGAGCTTCTAATGAACAATCACCAAGGCATCAAGGCTGAGATTGACGCTCGCAATGACAGCTTCACCACCTGCGTCGAGCTGGGAAAAACTCTACTTTCACGAAAACACTATGCTTCCGAAGAGATCAAAGAAAAGTTACTCCAGCTGACAGACAAGAGGAAAGAAATGATTGACAAGTGGGAAGATCGATGGGAATGGCTGCGACTGGTTCTGGAGGTGCACCAGTTCTCACGGGACGCGGGTGTGGCTGAGGCATGGCTGCTGGGTCAGGAGCCATACCTGTCCAGTCGAGAGGTGGGGCAGAGTGTGGATGAGGTGGAGAAGCTCATCAAGAGGCACGAGGCTTTCGAGAAGTCAGCCGCCACTTGGGAGGAGCGTTTTGCCGCTCTGGAGAGACTTAccacgaTGGAATTACTGGAAGTGAGAAGACagcaagaggaagaggaaaagaagagacaGGCCCAACTTGCAGAAGCTCCACCTACTGAGACAGCATCAACACAGCAGAGAGAGAGTGAGCAGGTATCTCAGAACGGGCCGCCGCCAGAGCAGGACTCTCCCCGGGAGGACACGGGAGGAAGTGATGTAGTTAATGGGGTGGCAGAGTCCAGTCCAGGCTCCTCCCCAACAGGAAGCCGCAAGGGGAAAGTGGGTCAAGCTGCTACACTACCAACCAAGTCCCAGGACACAGCTGCGGCGCAGATTGAGGGCTTCCTGAACCGCAAACATGAGTGGGAGGGCCACAACAAGAAAGCATCCAATAGATCCTGGCACAATGTCTACTGTGTGATAAATAACCAAGAGATGGGCTTTTACAAAGACAGCAAGAGTGCTAGTCAGGGAATCCCATACCATGGTGAAGTTCCCATTAGTCTGAAGGAATCGACATGCGAGGTCGCCCTTGActacaagaagaagaaacatgtTTTCAAACTCAAAATTTCGAATGGGAATGAGTATCTCTTCCAAGCCAAAGATGAtGAGGAGATGAACTCATGGATCCAGGCGATCTCATGCAAGACACCCTCGGAGATCAGCAGCCATAGCACTCCCGCCTCGGGACGCACCCAAACCCTGCCCACCTCTGTCAGCATGGGTGCTGAGTCCAGCCCAGGCAAGCgggagaaagacaaagagaagcGCTTCAGCCTCTTCAAAAAGAAATAGATCTTTcccagcagttttttttttttccttcttttcatcctcttcctgaagtggAACACCACGCAAAAGCTCAGAGACAAAAGTCCACACTTGGTGCCTGAGACTCCTCTGAgtaggctcttttttttttcatttttggtttaAAAGGAAGGAGCTGGAGAATATTTTAGGGTTCTTAGATTATGAGGTGCTTTGAGCAgtcatttgtaaatcattctTAAGTCTCAGAgacaatttattataattaataagcTTTCTTTCCACGTATCATCTCTTCTTTCTTTGTACTTGCTTTCGTTCAGTATATCTGCTTTAGTGCGATGAAGTCTGGCtagttttttcctctctctcttgttttgtaAGTGCGTGACGTTTGTAGGATCTGCCCTCAGTTTTGTGAGGCGTTTACTGATGGGGGGCAGTGGTGCTTTAGACTCCGTTGAGTTGTTAACCTGCTGGTGAATTTACTTTACTAATAAAAGCATTAGCCATTATAAGTTTCCttaaagggcagtctctgtatTAAGAGCTTAGTATGAAGCAAATGCGTCTCAATGCAAACCCACAAAATAGTGGCTAATATTTGCTTTTGCTGAAATGTTTGATATGTTAATGATATGTGAATGGTCAGAATGTTGGCTACTTATGAAGGAATACTTTTATCAAggataaaaaacattttttaaaaatagttttttcttcttgtaCTTGAGTTGCaatatattgtatgtttaaaaattatttagagtaaaatatgaaaatagatgTATTGTAACTCCTAAAAGGCGTCATTTGTTAAGTATAGAAATGGATTGTGTTATTTCTTGGGGGGGAGAAATCATATGACTGAAAAAAACAGCTGCTTGCTTGTTGGCTATAGCACCATGTGTTCTCATTTCGCTACTTTCTCTGGCTACCTGATATAGTGCGCAATCTGTCAGTGTAACTATTGTAACAATACCTTTCCATCATTATTGCACAATCAGAATAATGCCATATTGCCTCTGGGGCTTGCTGGTTCTTATGTAAAACATGGACCCAGACCTCATGTGGATGGATCTGCACCTGTAGCCTTTTAGCCTATCTGTTATAAATACGTGCAAAGTCATTAAAATGCTTTTGAAATTAAAACGTTTGCTGTTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467505 lncRNA upstream 29474 8466269 ~ 8466602 (+) True G394306
TU467489 lncRNA upstream 55639 8420682 ~ 8440437 (+) True G394291
TU467449 lncRNA upstream 210737 8285006 ~ 8285339 (+) True G394262
TU467447 lncRNA upstream 215872 8279534 ~ 8280204 (+) True G394260
TU467413 lncRNA upstream 260916 8234679 ~ 8235160 (+) True G394229
TU467590 lncRNA downstream 77606 8660696 ~ 8661230 (+) True G394373
TU467767 lncRNA downstream 269454 8852544 ~ 8852767 (+) True G394520
TU467774 lncRNA downstream 329790 8912880 ~ 8913084 (+) True G394527
TU467802 lncRNA downstream 424784 9007874 ~ 9008080 (+) True G394555
TU468001 lncRNA downstream 882438 9465528 ~ 9465728 (+) True G394747
XM_026942941.2 mRNA upstream 9541 8474884 ~ 8486535 (+) True LOC113544248
XM_026943189.2 mRNA upstream 58880 8414473 ~ 8437196 (+) True slc30a6
XM_026943208.2 mRNA upstream 85535 8400794 ~ 8410541 (+) True LOC113544399
XM_026943209.2 mRNA upstream 85535 8400794 ~ 8410541 (+) False LOC113544399
XM_026943138.2 mRNA upstream 106629 8378414 ~ 8389447 (+) True chs1
XM_026943101.2 mRNA downstream 26377 8609467 ~ 8623393 (+) True slc12a10.1
XM_026943122.2 mRNA downstream 79154 8662244 ~ 8685925 (+) True nvl
XM_026943056.2 mRNA downstream 162727 8745817 ~ 8758376 (+) False phf3
XM_026943055.2 mRNA downstream 162727 8745817 ~ 8758376 (+) False phf3
XM_034301143.1 mRNA downstream 162727 8745817 ~ 8758376 (+) False phf3
TU467438 other upstream 236774 8258928 ~ 8259302 (+) True G394251
TU466595 other upstream 1065166 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1595136 6896993 ~ 6900940 (+) False LOC117596330
XR_003404502.2 other upstream 1877394 6615959 ~ 6618682 (+) False LOC113544406
trnal-cag_18 other downstream 113107 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 552867 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1517922 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1616233 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other downstream 1616233 10199323 ~ 10224804 (+) False LOC113544300

Expression Profile