RNA id: XR_004577464.1


Basic Information

Item Value
RNA id XR_004577464.1
length 1504
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id LOC117596306
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 4864296 ~ 5074406 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaatataaacaaaacatgaataaacatttttctccagaattttgaacaaaatgtgtgtgaaagtctAAAGAATCCAACGTTTGTTGTTTTAATTAGCTGAGGggagtcaggtgtgttaaatcagAGCAGCTAATCTCAGCAGCCCTTCAGCTCTGGAGCCTGACATCACTGCTCTAGTCACCTTTTCATAAACATACATTGAACCATTTAGCCTCTGCGGATAAAAACATGACCTGAGGCGAGACAGTGGAAAGGCTGGAGGCAGAGATATAGCGTGAAGAGAGGAACAGCAGGATTGAGCCGGATTGTTAGAGGAGAAATAACAGGAGAAGCAGAGAAGCAGAGCCTGCAGAGCGGAGGAGTGGATGTGCTGGGTGAAACATGGTGGAAGATGATTGACATAAAGCGACAGGCGCCAGGAACGTCACACCCTTCACCTGAAGAGGCTTGACGGATTAGACAGGACTCTATAGAGCAAAAGTTCCTGAGTGCGTCTTTGAGGACCAGTGCAAACTTGGACTTTTATTTGGACTCCAGCTCCCATTCCACCTAAGGCCAGGTTGAATTTGGTGAAGCAAACCATCACAAaacccctcctccctccctcacgCAAGGAGTTGTGGGCAACATTAGCTGAAAACGTGTCCATGGGTCCACACTTGGAAAATCTACCAGGAATAGTAGACCATCCAGTTACCATTCAGTGAAACCGAGAAGAGTGGCCATCATTCAGGAAGCAAAAATTCCCAGCATTCATCTGTTGAACCACATGAACAGAGAAGCAgaagcaaagaaaataaaaaagcaccATCATTAAAACCATCATTTATCAGACCTGCCGCTATCCACTGGAGGAACCTCAGCCTGCCATCAGACTGTGGATGCCATCTGTCCCGACTGCAGATAAATATCTGTTGGGAACTTTGAACATGGGATTACTGAATGTCAACAGGGTTGAGTTGATCCGAGTGCTCCGTTTCTATGAGGTTGGGGATTTTCAGGTAAAACAGTATGCAAAGATATCTGTAAAAATGAAGTGTCTCTTATTGTGAAGTCTTTCTGTTGAAGTTCATCACAAATGTTCACCAGATATTGTGGAATTTCCATCTTCCACCATTGTACAAAATAGGTTAAGCCTGTGTCTGTGGTGTAATCAAtgacaactaaaaaaaaacatacatattatTAACCACTAAAACCTCGGAAATCTAGAGCTCCCACCTAGTCCCACTAGTCTATACAGTCCTATAAAATTACATCTTAAGAGTCTATGATGGTGCTTGCTCCATGAAAtgtcatgtttaaaatgttaaatcttAATTAGTTAGGAATTATTTGGAGTACAGACGTACTTATTACAACCACAAATCTACTCATAGCTTCACAGTTCAGATGTATGATggattttgctgttgtttttgttcatttgtttggaTTATAAATCAGGCTTAcatgatttttgtattttttacttattCACTGTTcagtccctggaggactagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464304 lncRNA upstream 117767 4744921 ~ 4746529 (+) True G391512
TU464291 lncRNA upstream 158593 4703768 ~ 4705703 (+) True G391500
TU464251 lncRNA upstream 384957 4463927 ~ 4479339 (+) False LOC113545745
XR_004577489.1 lncRNA upstream 404956 4445456 ~ 4459340 (+) True LOC117596354
TU464117 lncRNA upstream 650468 4213244 ~ 4213828 (+) True G391386
XR_004577517.1 lncRNA downstream 21842 5096248 ~ 5156707 (+) True LOC117596386
XR_004577518.1 lncRNA downstream 101684 5176090 ~ 5185657 (+) True LOC117596387
TU464372 lncRNA downstream 297635 5372041 ~ 5376797 (+) True G391574
TU464420 lncRNA downstream 330115 5404521 ~ 5404752 (+) True G391612
TU464377 lncRNA downstream 412070 5486476 ~ 5489315 (+) True G391576
XM_026945247.2 mRNA upstream 7322 4484089 ~ 4856974 (+) False LOC113545745
XM_026945168.2 mRNA downstream 486 5074892 ~ 5078909 (+) True LOC113545709
XM_026945370.2 mRNA downstream 113153 5187559 ~ 5231439 (+) True LOC113545783
XM_026945385.2 mRNA downstream 293038 5367444 ~ 5369498 (+) True LOC113545788
XM_026945297.2 mRNA downstream 339484 5413890 ~ 5419090 (+) True LOC113545754
XM_026945293.2 mRNA downstream 353631 5428037 ~ 5436881 (+) False alpk1
TU461743 other upstream 3913889 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4059080 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4063730 790488 ~ 800566 (+) False G389524
TU465523 other downstream 1151951 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 1151951 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 1541553 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 1541553 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 1541553 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile