Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577478.1 |
| length | 720 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 5 |
| gene id | LOC113544421 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047622.1 |
| NCBI id | CM018568.1 |
| chromosome length | 15845479 |
| location | 7133096 ~ 7151569 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU466410 | lncRNA | upstream | 47081 | 7085797 ~ 7086015 (+) | True | G393301 |
| TU466402 | lncRNA | upstream | 71426 | 7055328 ~ 7061670 (+) | True | G393293 |
| TU466225 | lncRNA | upstream | 183788 | 6944819 ~ 6949308 (+) | True | G393150 |
| XR_004577471.1 | lncRNA | upstream | 234084 | 6896993 ~ 6899012 (+) | True | LOC117596330 |
| TU466182 | lncRNA | upstream | 251570 | 6877171 ~ 6881526 (+) | True | G393116 |
| XR_004577477.1 | lncRNA | downstream | 3808 | 7155377 ~ 7163031 (+) | True | LOC117596340 |
| TU466466 | lncRNA | downstream | 26251 | 7177820 ~ 7245118 (+) | True | G393351 |
| TU466519 | lncRNA | downstream | 139669 | 7291238 ~ 7349517 (+) | True | G393394 |
| TU466517 | lncRNA | downstream | 159244 | 7310813 ~ 7332101 (+) | False | G393394 |
| TU466576 | lncRNA | downstream | 216311 | 7367880 ~ 7371501 (+) | True | G393450 |
| XM_026942923.2 | mRNA | upstream | 91184 | 7034279 ~ 7041912 (+) | True | LOC113544234 |
| XM_026943225.2 | mRNA | upstream | 100366 | 7000205 ~ 7032730 (+) | True | casq1b |
| XM_026942877.2 | mRNA | upstream | 186373 | 6940267 ~ 6946723 (+) | False | zgc:92594 |
| XM_026942963.2 | mRNA | downstream | 150070 | 7301639 ~ 7306530 (+) | True | LOC113544270 |
| XM_034301380.1 | mRNA | downstream | 249800 | 7401369 ~ 7409804 (+) | False | si:ch211-63p21.1 |
| XM_026942870.2 | mRNA | downstream | 249803 | 7401372 ~ 7409804 (+) | True | si:ch211-63p21.1 |
| XM_026942869.2 | mRNA | downstream | 249805 | 7401374 ~ 7409804 (+) | False | si:ch211-63p21.1 |
| XM_026943190.2 | mRNA | downstream | 261627 | 7413196 ~ 7419635 (+) | True | LOC113544382 |
| XR_004577472.1 | other | upstream | 232156 | 6896993 ~ 6900940 (+) | False | LOC117596330 |
| XR_003404500.2 | other | upstream | 514414 | 6615959 ~ 6618682 (+) | False | LOC113544406 |
| TU466595 | other | downstream | 276049 | 7427618 ~ 7430910 (+) | True | G393467 |
| TU467438 | other | downstream | 1107359 | 8258928 ~ 8259302 (+) | True | G394251 |
| trnal-cag_18 | other | downstream | 1544628 | 8696197 ~ 8696279 (+) | True | trnal-cag_18 |
| XR_003404490.2 | other | downstream | 1984388 | 9135957 ~ 9137421 (+) | False | LOC113544250 |
| TU468433 | other | downstream | 2949443 | 10101012 ~ 10116924 (+) | True | agpat4 |
