Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577500.1 |
| length | 340 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 3 |
| gene id | LOC117596362 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047622.1 |
| NCBI id | CM018568.1 |
| chromosome length | 15845479 |
| location | 3136628 ~ 3171123 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0001706 | endoderm formation | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU463087 | lncRNA | upstream | 630130 | 2506065 ~ 2506498 (+) | True | G390456 |
| TU463039 | lncRNA | upstream | 768362 | 2364554 ~ 2368266 (+) | False | LOC113545784 |
| TU463040 | lncRNA | upstream | 768362 | 2364554 ~ 2368266 (+) | False | LOC113545784 |
| TU463037 | lncRNA | upstream | 779834 | 2356333 ~ 2356794 (+) | True | G390411 |
| TU462678 | lncRNA | upstream | 1191173 | 1944549 ~ 1945455 (+) | True | G390077 |
| TU463627 | lncRNA | downstream | 228058 | 3399181 ~ 3400825 (+) | False | LOC113545782 |
| TU463846 | lncRNA | downstream | 229805 | 3400928 ~ 3401783 (+) | True | G391143 |
| XR_003404650.2 | lncRNA | downstream | 977912 | 4149035 ~ 4175902 (+) | False | LOC113545714 |
| XR_004577481.1 | lncRNA | downstream | 991520 | 4162643 ~ 4175902 (+) | False | LOC113545714 |
| TU464077 | lncRNA | downstream | 995323 | 4166446 ~ 4172011 (+) | True | LOC113545714 |
| XM_026945363.2 | mRNA | upstream | 697746 | 2432863 ~ 2438882 (+) | True | zgc:64201 |
| XM_034301379.1 | mRNA | upstream | 706638 | 2415080 ~ 2429990 (+) | True | ppp1r21 |
| XM_026945389.2 | mRNA | upstream | 723513 | 2388846 ~ 2413115 (+) | False | rtn4b |
| XM_034301144.1 | mRNA | downstream | 122068 | 3293191 ~ 3333177 (+) | True | LOC113545751 |
| XM_034301145.1 | mRNA | downstream | 122068 | 3293191 ~ 3333177 (+) | False | LOC113545751 |
| XM_034301147.1 | mRNA | downstream | 122068 | 3293191 ~ 3333177 (+) | False | LOC113545751 |
| XM_026945283.2 | mRNA | downstream | 122068 | 3293191 ~ 3333177 (+) | False | LOC113545751 |
| XM_026945286.2 | mRNA | downstream | 122068 | 3293191 ~ 3333177 (+) | False | LOC113545751 |
| TU461743 | other | upstream | 2186221 | 934929 ~ 950407 (+) | False | G389438 |
| TU461983 | other | upstream | 2331412 | 804360 ~ 805216 (+) | True | G389525 |
| TU461981 | other | upstream | 2336062 | 790488 ~ 800566 (+) | False | G389524 |
| TU465523 | other | downstream | 3055234 | 6226357 ~ 6239070 (+) | False | lrba |
| TU465524 | other | downstream | 3055234 | 6226357 ~ 6239070 (+) | False | lrba |
| XR_004577479.1 | other | downstream | 3444836 | 6615959 ~ 6618682 (+) | True | LOC113544406 |
| XR_003404500.2 | other | downstream | 3444836 | 6615959 ~ 6618682 (+) | False | LOC113544406 |
| XR_003404501.2 | other | downstream | 3444836 | 6615959 ~ 6618682 (+) | False | LOC113544406 |
