RNA id: XR_004577517.1


Basic Information

Item Value
RNA id XR_004577517.1
length 782
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC117596386
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5096248 ~ 5156707 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGACTACTCAAGTGCACTGTCAACAGTTTAAAACAAACTCATAGCTCTGTTTGTCAGAGAGCTGCAGGAAACAGCTTTAATTTAACCGGCAGCAACTACAGTTCAAGCTTTTGCTGGTTTCTGTTTTGATTCTGGTCATGTGTACTGATGCCATGTTTTACAcaccctctctgtctttctttacaACTCTTAAGGGTGTAATCTCTTTCTTGTAATACCTAATACTTGCTATCAGCAGCAAGCTAGCACAGTGTGAGTGCTAAGTAGCAGGATTACTAGTTACCTAGCATAATACCTAGCTACCTTGCTTGCTAGCAAGCAAAATAAAATCCCATCCGCTGTCACAGACAGATGGATTCTCGTTGTCTCTCGGTAATGGCCATGTCTGTCACACGATTGCGCAAGAGGagttccctgctgaaaaatccatcTTGGTGTGACAAgataccagctgccaaaactggccatgctagCAGACCATCTTTGCTAGCTAGATTATGTTGACAACAAGACCATTTTTTCAAGACAATTGCATCCGATTGCAGTGGCTCCTGAGTCAGTTCTGTTTCTGATGTCTACACTGATGCTGACTCAATCCCACGGACCACCAAGGAGTCTCTGTTAGAAACTGTCGGAAGACAACATCCTGTTCACACACCGACACCATGGTGACCAGTGACATCATGGAGACAGAAATCCTCATCCCTATATAAACAGTtaacttcagaattattggcaccctttatggAAATGAGCAACAATGAATAGCTGCAATGCaata

Function

GO: NA

KEGG:

id description
ko03030 DNA replication

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577463.1 lncRNA upstream 21842 4864296 ~ 5074406 (+) True LOC117596306
XR_004577464.1 lncRNA upstream 21842 4864296 ~ 5074406 (+) False LOC117596306
XR_004577465.1 lncRNA upstream 21842 5070934 ~ 5074406 (+) False LOC117596306
XR_004577466.1 lncRNA upstream 94760 4864297 ~ 5001488 (+) False LOC117596306
TU464304 lncRNA upstream 349719 4744921 ~ 4746529 (+) True G391512
XR_004577518.1 lncRNA downstream 19383 5176090 ~ 5185657 (+) True LOC117596387
TU464372 lncRNA downstream 215334 5372041 ~ 5376797 (+) True G391574
TU464420 lncRNA downstream 247814 5404521 ~ 5404752 (+) True G391612
TU464377 lncRNA downstream 329769 5486476 ~ 5489315 (+) True G391576
TU464378 lncRNA downstream 329769 5486476 ~ 5489315 (+) False G391576
XM_026945168.2 mRNA upstream 17339 5074892 ~ 5078909 (+) True LOC113545709
XM_026945247.2 mRNA upstream 239274 4484089 ~ 4856974 (+) False LOC113545745
XM_026945370.2 mRNA downstream 30852 5187559 ~ 5231439 (+) True LOC113545783
XM_026945385.2 mRNA downstream 210737 5367444 ~ 5369498 (+) True LOC113545788
XM_026945297.2 mRNA downstream 257183 5413890 ~ 5419090 (+) True LOC113545754
XM_026945293.2 mRNA downstream 271330 5428037 ~ 5436881 (+) False alpk1
XM_026945294.2 mRNA downstream 271332 5428039 ~ 5436881 (+) True alpk1
TU461743 other upstream 4145841 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4291032 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4295682 790488 ~ 800566 (+) False G389524
TU465523 other downstream 1069650 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 1069650 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 1459252 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 1459252 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 1459252 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile