RNA id: TU472201


Basic Information

Item Value
RNA id TU472201
length 425
lncRNA type intronic
GC content 0.48
exon number 2
gene id G398135
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 107329 ~ 107775 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTGTGCTTACATCAATGATGCTTGGTGCCGTGACGCTGTTGTGGTCTGCAGACACTGTTCACCCCTGGCGGAGTTCACGATTATTAAGTGCCGTCCGTTCTATCTACCGAGGGAATATACAGCCATACTGCTCGTTGCTGTATACATCCCTCCCAGCTCCAGTAACAACAACAGGAGTGAGGCACTGAATGAACTATACCAGCACATCAGTGAGCAGCAGACATCTTGGCTGGGGATTTCAACCATGCAGACCTAAAGAGTGTGTTTCCTAAAATATATCAACACATAGACTTTCCAACTAGGGGAAACAACATACTGGACTTTGTTTACACCACCCAGAGTGGAGCTTACAAGGCTCTTCCCTTCCCCCACCTTGGTGCCTCAGACCACATCACTGTCATGCTAATGCCTGCATACAGACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472206 lncRNA upstream 62057 169832 ~ 193133 (-) True G398140
XR_004577548.1 lncRNA upstream 197298 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA upstream 197298 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA upstream 197504 305279 ~ 305873 (-) False LOC117596423
TU472224 lncRNA upstream 199343 307118 ~ 307409 (-) True G398158
XM_034301547.1 mRNA upstream 39153 146928 ~ 287137 (-) True LOC117596420
XM_034301546.1 mRNA upstream 39153 146928 ~ 189183 (-) False LOC117596420
XM_034301550.1 mRNA upstream 190986 298761 ~ 310235 (-) True plbd1
XM_034301551.1 mRNA upstream 192204 299979 ~ 310236 (-) False plbd1
XM_034301553.1 mRNA upstream 204633 312408 ~ 324714 (-) True pick1
trnar-ccu_18 other upstream 202808 310583 ~ 310655 (-) True trnar-ccu_18
TU472228 other upstream 211959 319734 ~ 325545 (-) False pick1
TU472265 other upstream 366791 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 632468 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 777927 885702 ~ 890280 (-) True LOC117596444

Expression Profile