Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU472224 |
| length | 219 |
| lncRNA type | intronic |
| GC content | 0.50 |
| exon number | 2 |
| gene id | G398158 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 307118 ~ 307409 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577548.1 | lncRNA | downstream | 1245 | 305073 ~ 305873 (-) | False | LOC117596423 |
| XR_004577547.1 | lncRNA | downstream | 1245 | 305073 ~ 305873 (-) | True | LOC117596423 |
| XR_004577546.1 | lncRNA | downstream | 1245 | 305279 ~ 305873 (-) | False | LOC117596423 |
| TU472206 | lncRNA | downstream | 113985 | 169832 ~ 193133 (-) | True | G398140 |
| TU472201 | lncRNA | downstream | 199343 | 107329 ~ 107775 (-) | True | G398135 |
| XR_004577543.1 | lncRNA | upstream | 107056 | 414465 ~ 417319 (-) | True | LOC117596419 |
| TU472424 | lncRNA | upstream | 287709 | 595118 ~ 595989 (-) | True | G398304 |
| TU472461 | lncRNA | upstream | 334993 | 642402 ~ 644009 (-) | True | G398338 |
| TU472520 | lncRNA | upstream | 534527 | 841936 ~ 846790 (-) | True | G398393 |
| TU472521 | lncRNA | upstream | 540336 | 847745 ~ 848753 (-) | True | G398394 |
| XM_034301547.1 | mRNA | downstream | 19981 | 146928 ~ 287137 (-) | True | LOC117596420 |
| XM_034301546.1 | mRNA | downstream | 117935 | 146928 ~ 189183 (-) | False | LOC117596420 |
| XM_034301549.1 | mRNA | downstream | 190351 | 79388 ~ 116767 (-) | False | LOC117596421 |
| XM_034301553.1 | mRNA | upstream | 4999 | 312408 ~ 324714 (-) | True | pick1 |
| XM_034301536.1 | mRNA | upstream | 21452 | 328861 ~ 339349 (-) | False | LOC113525084 |
| XM_034301537.1 | mRNA | upstream | 21452 | 328861 ~ 339056 (-) | True | LOC113525084 |
| XM_034301539.1 | mRNA | upstream | 21452 | 328861 ~ 339039 (-) | False | LOC113525084 |
| XM_026911527.2 | mRNA | upstream | 33662 | 341071 ~ 350569 (-) | False | LOC113525087 |
| trnar-ccu_18 | other | upstream | 3174 | 310583 ~ 310655 (-) | True | trnar-ccu_18 |
| TU472228 | other | upstream | 12325 | 319734 ~ 325545 (-) | False | pick1 |
| TU472265 | other | upstream | 167157 | 474566 ~ 482008 (-) | False | LOC117596396 |
| TU472485 | other | upstream | 432834 | 740243 ~ 890280 (-) | False | LOC117596444 |
| TU472486 | other | upstream | 578293 | 885702 ~ 890280 (-) | True | LOC117596444 |
