RNA id: XM_034301553.1


Basic Information

Item Value
RNA id XM_034301553.1
length 2414
RNA type mRNA
GC content 0.50
exon number 14
gene id pick1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 312408 ~ 325545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCGGTTCGGGAGGCTGTACCCTGGTGCCGGTTCGGGAGGCTGTACCCTGGTGCCGGTTCGGGAGGCTGTAACCTGGCATGTTCTCAGACATCATGGACTACGAGCTAGAAGAAGATAAGCTagggATTCCCACAGTTCCTGGAACAGTGACCCTGAAGAAGGATGCGCAGAACCTGATTGGGATCAGTATAGGGGGCGGGGCTCAGTACTGCCCCTGTCTCTACATCGTACAGgtgtTTGATAACACCCCAGCAGCACTGGACGGGACATTAGCAGCAGGTGATGAGATCACAGGTGTAAACGGTAAACCAGTGAAGGGCAAGACCAAGGTGGAGGTGGCCAAGATGATCCAggctgtacaggtgtgtgtGATACACTATAATAAACTGCAAATCCCTCGATATCCCAAACAGGGCAAAATATCACACATagtGTTGAAGAAGGTGAAGCACCGGTTGGTGGAGAACATGAGCTCAGGAACAGCAGACGCACTGGGACTGAGCAGAGCCATCCtgtgtgtagatggacTTGTAAAGAAACTGGAGGAACTGGAGAAGACTGCAGAGCTGTACAAAGggttGATGGAACACAGTAAGCTGCTCAGAGTTGTTCTTAAGCTCTTTAAGACACACAGAGCGTTTGGTGATGTATTCTCGGTGATCGGTGTTCGGGAGCCGCAGGCTGCAGCCAGTGAGGCGTTTGTAAAATTTGCAGAAGCTCATCGTAACATTGAGAAATATGGCATCCAGCTGCTCAAAACCATCAAACCTatgctGCATGATTTGAACACATACCTTCACAAAGCGATTCCAGACACCAAACTCACCATCCGCAAATACCTGGATGTCAAGTTCGAGTACCTGtcataCTGTCTGAAGGTGAAAGAGATGGACGATGAGGAGTACAGCTGCATCgcgctGGGAGAGCCGCTGTACCGCGTCAGCACGGGGAATTATGAGTATCGTCTGATTCTGCGCTGTCGACAGGAAGCTCGCGCTCGATTCGCTAAAATGCGTAAAGACGTTCTGGAGAAGATCGAGCTGCTCGACCAGAAACACGtTCAGGACATTGTGTTCCAGCTGCAGAGGTTCGTCTCGGGGATGTCGCGTTACTATGACGAGTGTTACGCCGTGCTGAAGGAGGCCGACGTCTTCCCCATCGAGGTGGACCTCTCACGCACCACCCTGAACTACACCGCCCCTAACTACGAGGACGAGGATGAGGAGGGCGAGGAAGAgcgagaggaggagaagagtgAACAGACCGAGAACGGAGCGGAGAAGCTGATCGATGATGAATGAGTGAAGGAGTGAAGGagaacagtgagagagagagagagagagagagagagagatgcggagtgagtgtgaagagtgtgagtgtgtattgtttgttatattttcacacattcctgctgtgtgtgtttaactgtaGTCACGGTCGAGGTAATGAGCAGCACTAAACATTACTCCCTAAATCCCCGTCTAAGCCCTTCATCATGCAGCTCACTCGCTCTCTCCGTCCTGCTGTAGTACGCCGCCTTCTCTCACAGCTAATGTGCTCCACTGACACGCAGTTAGGGATGCATCAGTACCGTGTTTTTCAGTGTGCTAGTACTGATACTGATGCTCAGGTTAGTAACCTACCTAGTATTAATCGGTCAGGGACACCACTGAACGTTTTACACAGCTCTGTTTGTGGTGGTTGCTAACAGTGAGCGCCTCGGGCTGAGCTTCATGTTCCAGAGGTGAAGAtgtttaaacagtgtgtttaatggagaGCATGAGGCGTGTGCAGAGCAGCATCAGTGCTCTGAATAGCAGCTTAACAGCAAAGTGTAGACACTGATGAGCGCGGGGAAAGGGAAGTGCGTgagtgtctcagtgctcgcaggGCGGAACTGCTCTCAGGTGCGACAGCTTCTCCACACACTCGCGTCACTGCTCCATGGCACCTTGCGTTGGTTTTATGACCACGCTGGTCTGTGTGCTCAGGTCGGACTGCCTCATACTCCTCCTCCAGTACGGCAATCGGTGCATCCCTACactgtgtgatttgggacagaGCGTTACTCACACTGCAGAATTTTAACTTTGCCCTTCGCATTAAAAAGACGTAAAAcggttttgttcatttcataaACTGGGATTTATCATGACTTTATCGTGACTTTTATGTATTTAAGCAGGTTTGACACCAACAGCTAAATGGTGTTATAAATGCGTATCTGTGTTCACCAGCTCTGTCCTGCTGATGGCAATGGGAGCTTTGTCCCAGGTTTCAGCCTACTGTAGTCTACAGTATGTtaaatatacaccgatcagccataacattaaaacctctGACAGATgcagtgaacagtcagttcttgaagttgatgtgttggaggaaaaatgggcaagtgtgaggatc

Function

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K24062 PICK1; PRKCA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472224 lncRNA downstream 4999 307118 ~ 307409 (-) True G398158
XR_004577548.1 lncRNA downstream 6535 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA downstream 6535 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA downstream 6535 305279 ~ 305873 (-) False LOC117596423
TU472206 lncRNA downstream 119275 169832 ~ 193133 (-) True G398140
XR_004577543.1 lncRNA upstream 89751 414465 ~ 417319 (-) True LOC117596419
TU472424 lncRNA upstream 270404 595118 ~ 595989 (-) True G398304
TU472461 lncRNA upstream 317688 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 517222 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 523031 847745 ~ 848753 (-) True G398394
XM_034301551.1 mRNA downstream 2172 299979 ~ 310236 (-) False plbd1
XM_034301550.1 mRNA downstream 2173 298761 ~ 310235 (-) True plbd1
XM_034301547.1 mRNA downstream 25271 146928 ~ 287137 (-) True LOC117596420
XM_034301546.1 mRNA downstream 123225 146928 ~ 189183 (-) False LOC117596420
XM_034301549.1 mRNA downstream 195641 79388 ~ 116767 (-) False LOC117596421
XM_034301536.1 mRNA upstream 4147 328861 ~ 339349 (-) False LOC113525084
XM_034301537.1 mRNA upstream 4147 328861 ~ 339056 (-) True LOC113525084
XM_034301539.1 mRNA upstream 4147 328861 ~ 339039 (-) False LOC113525084
XM_026911527.2 mRNA upstream 16357 341071 ~ 350569 (-) False LOC113525087
XM_026911528.2 mRNA upstream 16357 341071 ~ 350569 (-) True LOC113525087
trnar-ccu_18 other downstream 1753 310583 ~ 310655 (-) True trnar-ccu_18
TU472265 other upstream 149852 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 415529 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 560988 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 574814 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 582911 907625 ~ 907779 (-) True LOC117596481

Expression Profile