RNA id: XM_034301441.1


Basic Information

Item Value
RNA id XM_034301441.1
length 1264
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC117596396
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 473750 ~ 482008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGGTGGTTTATGCTGCACTTGGCATCCTTGTTGCTGACTGAGAAACAGAAAGTATCTTTTGATCAAGAGAACTCGACGTTCACGAGGCGGTTTTCAAAAGAACAAAACCTTTTGTCTGAAATCTTTTTCTCAAACGTTTCTCTACACTGCAATAATCAGCTACAGAGGTCATCTACAAACTGAAGATGAGTCTCACAGATGAAATCACCACCCATGGAGACCCATTGTTAAAGGGAACAAATATAGAAGACCTCATTAAAAAGAACAAGCCTTTGTGTGAGCTTGTTCAGCAGTGTGGAGGTATATATCAcgtatttaacaataaaaacctGGGGAGCAGAGACCAGGTCAGTGTGCTACTGCAAAAAATAGACAGAATGATGGAGAACAAAGGAGGAATCTATGACTCCagacaggaggaggagaaaggaggagaaagcaggataagaagaaaagaagatgaacaaaaacagaaagaggaagaacaaAGATACAACAAAGATACTGATActgctgctggtgctgcttTTGGTTCTTCTATTGGTGCTGCTGGTTATGCTGCTACTTGTGCTGCTGGTGGCGCTGCTGGTGGTGCTGCTAATGGTGGTGCTGCTAGTGATGCTGCTAAtagtgctgctggtggtgctgCAAGTGGTGCTGCTACTGGTGGTGCTGCTACTGATGCTGCAGGTGGTGCTGCAAGTGGTGCTGTTAGTGGGGCTGCAAGTAGTGCTGCTAgtggtgctgctggtggtgctgtggtggtggtgctggtgctgcAATTGGTGCTGCAAttggtgctgctgctggtgctgcAATTGGTGCTGCTACTGGTGCTGCAAttggtgctgctgctggtgctgcAAGTGGTGCTGCTACTGGTGCTGCAAgtggtgctgctggtggtgctgCAAGTGGTGCTGCAAGTGGTGCTGCAAgtggtgctgctggtggtgctgCAAGTGGTGCTGCAAgtggtgctgctggtggtgctgCTGGTGGTACTGCAAGTGGTGCTGCAGGTGGTGCTGCTGGTGGTACTGCAAGTGGTGCTGCTGGTGGTACTGCAAGTGGTGCTGCAAGTGGTGCTGCAGGTGGTGCTGCTGGTGGTACTGCAAGTGGTGCTGCAGGTGGTGCTGCTGGTGGTACTGCAAgtggtgctgctggtggtgctgCTGGTGGTACTGCAAgtggtgctgctggtggtgctgttggTGCTTTTACTTGTCTTGCTTTTACTTATGCTATATTTCTTACTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577543.1 lncRNA downstream 56431 414465 ~ 417319 (-) True LOC117596419
TU472224 lncRNA downstream 166341 307118 ~ 307409 (-) True G398158
XR_004577548.1 lncRNA downstream 167877 305073 ~ 305873 (-) False LOC117596423
TU472424 lncRNA upstream 113186 595118 ~ 595989 (-) True G398304
TU472461 lncRNA upstream 160470 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 360004 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 365813 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 368518 850450 ~ 851339 (-) True G398395
XM_026911532.2 mRNA downstream 14567 418017 ~ 459183 (-) False LOC113525088
XM_026911531.2 mRNA downstream 14567 418017 ~ 459183 (-) False LOC113525088
XM_026911529.2 mRNA downstream 14567 418017 ~ 459183 (-) False LOC113525088
XM_026911530.2 mRNA downstream 14940 418017 ~ 458810 (-) True LOC113525088
XM_026911533.2 mRNA downstream 74564 373143 ~ 399186 (-) False LOC113525089
XM_026911534.2 mRNA upstream 46329 528261 ~ 561037 (-) True LOC113525090
XM_026911521.2 mRNA upstream 89769 571701 ~ 588652 (-) False LOC113525082
XM_026911520.2 mRNA upstream 89769 571701 ~ 588652 (-) True LOC113525082
XM_034301443.1 mRNA upstream 162116 644048 ~ 645951 (-) True LOC113547081
XM_034301708.1 mRNA upstream 170566 652498 ~ 661063 (-) True LOC117595703
TU472228 other downstream 148205 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 163095 310583 ~ 310655 (-) True trnar-ccu_18
TU472485 other upstream 258311 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 403770 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 417596 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 425693 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 428137 910069 ~ 910223 (-) True LOC117596482

Expression Profile