RNA id: TU472424


Basic Information

Item Value
RNA id TU472424
length 332
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G398304
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 595118 ~ 595989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ataatcattaacaccgtcggtgttgaattaataaggcataatcattaacaccgtcggtgttgaattaataaggcataatcattaacaccgtCTGTGCTGAATTAATAAGgcataatcattaacaccgtcggtgttgaattaataaggcataatcattaacaccgtcagtgttgaattaataaggcataatcattaacaccgtcagtgctgaattaataaggcataatcattaacaccgtcagtgttgaattaataaggcataatcattaacacagtcagtgctgaattaataaggcataatcattaacaccgtcggtgttgaattaacaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577543.1 lncRNA downstream 177799 414465 ~ 417319 (-) True LOC117596419
TU472224 lncRNA downstream 287709 307118 ~ 307409 (-) True G398158
XR_004577548.1 lncRNA downstream 289245 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA downstream 289245 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA downstream 289245 305279 ~ 305873 (-) False LOC117596423
TU472461 lncRNA upstream 46413 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 245947 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 251756 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 254461 850450 ~ 851339 (-) True G398395
TU472497 lncRNA upstream 283036 879025 ~ 881892 (-) True G398371
XM_026911521.2 mRNA downstream 6466 571701 ~ 588652 (-) False LOC113525082
XM_026911520.2 mRNA downstream 6466 571701 ~ 588652 (-) True LOC113525082
XM_026911534.2 mRNA downstream 34081 528261 ~ 561037 (-) True LOC113525090
XM_034301441.1 mRNA downstream 113186 473750 ~ 481932 (-) True LOC117596396
XM_026911532.2 mRNA downstream 135935 418017 ~ 459183 (-) False LOC113525088
XM_034301443.1 mRNA upstream 48059 644048 ~ 645951 (-) True LOC113547081
XM_034301708.1 mRNA upstream 56509 652498 ~ 661063 (-) True LOC117595703
XM_034301706.1 mRNA upstream 81914 677903 ~ 692387 (-) True sox10
XM_034301707.1 mRNA upstream 81914 677903 ~ 690295 (-) False sox10
XM_026939079.2 mRNA upstream 130961 726950 ~ 734134 (-) True LOC113541895
TU472265 other downstream 113110 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 269573 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 284463 310583 ~ 310655 (-) True trnar-ccu_18
TU472485 other upstream 144254 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 289713 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 303539 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 311636 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 314080 910069 ~ 910223 (-) True LOC117596482

Expression Profile