RNA id: TU472461


Basic Information

Item Value
RNA id TU472461
length 1344
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G398338
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 642402 ~ 644009 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGTAACCATGAACTATAACACAGGAAGGAGAGCAAGAGCACAGGAAAGTCCCTGAGCACTCCACACTGCACTGATATTAGGCTGTTGGACCCGACTGTGGCAGACTGGAAACTGTGCACCTCTCACACCAGCGATGAACAGAGtATGCAGCTGTCGGATGCTTGATTACGGCGCCGGGTGGACGACTGTGTAAAAGACTAAACTAGAACTCAGTATATCATGATGaTGCTCCACAGGAGAGTGAGTGTCTCACTGGATCTCAAATGCATCTCATCTGTCAAAATAATGCAGGATGATTTTTATCCCAGAACATTTTAAAGAGCCAAAGAGTCATGAATAGGACTTTTAAACACTGCAAAGCATCATGCAGTTACAATGTGCATCAAATATGGACCACTCCAAAGTTATTAGCACCCTtcttaaaaatgagcaaaaaggaATTACATGCATGGAGTGATATTTTGATCTTAAAAAGATGGCGACTGTTTATTTCATCAAACAGGTTGCTTAAGTAGTGCACTCCCACAGTTAATATTCTGTTAGAGAATAACAGCTAGGCTGGAGAGTACACTAGTGAGATATACCATCATCCTATTGTGCTCTATAACCACTGCAGATTGATGATAGTATCGTCTGAGGCTTTGGAGGGGTGAAAGCTACAGCGATACTGAGGGGGGAAAGgaaaggggcgtggccagacATACATAACACGTGCcatgtacattttaaatcattacagaaaaaaaaacttcttgaATCTGCGTAGTCTAGCAGTAGCTGTTAGTCTGAATGCTCGTGTTGTTCTGTTGTCTTGTGCTTCCCCTTATGTTATACccattacagttacagtgaaTTGTTATACAGAGTTCTCAGAGCTGCCacatctcatctctctgctcctCTGAATGTGCATGTGACAAACTTTTGAATCTTGGATCTAGTCACTAGCATTAGCATGTAGtcactttttttcacattatcaAGGTCAGCAATGCTTTCCAAACCAAAATGGggtctataaataaatataattaatttaattataaattaaattatgctggaccccctgcagtttgcttaccaAGCAAACCAggtctgtggatgatgcagtcaatACGGGATTGCACTACATCCTCCAACATCTGGACAAACCAGGGGCTTCTGAATAAACTGACACAGCTCTCTGTACCCACCTCcatctgtcagtggatcaccagcttcctgacagacaggcagcagctagtgaggctgggaaaattcacatccaacacccgcaccatcagcactggagctcctcagggctgCGTTCTCTCCCCACTGCTTTTCTCCCTCTACACAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472424 lncRNA downstream 46413 595118 ~ 595989 (-) True G398304
XR_004577543.1 lncRNA downstream 225083 414465 ~ 417319 (-) True LOC117596419
TU472224 lncRNA downstream 334993 307118 ~ 307409 (-) True G398158
XR_004577548.1 lncRNA downstream 336529 305073 ~ 305873 (-) False LOC117596423
TU472520 lncRNA upstream 197927 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 203736 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 206441 850450 ~ 851339 (-) True G398395
TU472497 lncRNA upstream 235016 879025 ~ 881892 (-) True G398371
TU472530 lncRNA upstream 239180 883189 ~ 925071 (-) True G398403
XM_026911521.2 mRNA downstream 53750 571701 ~ 588652 (-) False LOC113525082
XM_026911520.2 mRNA downstream 53750 571701 ~ 588652 (-) True LOC113525082
XM_026911534.2 mRNA downstream 81365 528261 ~ 561037 (-) True LOC113525090
XM_034301441.1 mRNA downstream 160470 473750 ~ 481932 (-) True LOC117596396
XM_026911530.2 mRNA downstream 183592 418017 ~ 458810 (-) True LOC113525088
XM_034301443.1 mRNA upstream 39 644048 ~ 645951 (-) True LOC113547081
XM_034301708.1 mRNA upstream 8489 652498 ~ 661063 (-) True LOC117595703
XM_034301706.1 mRNA upstream 33894 677903 ~ 692387 (-) True sox10
XM_034301707.1 mRNA upstream 33894 677903 ~ 690295 (-) False sox10
XM_026939079.2 mRNA upstream 82941 726950 ~ 734134 (-) True LOC113541895
TU472265 other downstream 160394 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 316857 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 331747 310583 ~ 310655 (-) True trnar-ccu_18
TU472485 other upstream 96234 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 241693 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 255519 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 263616 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 266060 910069 ~ 910223 (-) True LOC117596482

Expression Profile