Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU472485 |
| length | 647 |
| RNA type | TUCP |
| GC content | 0.50 |
| exon number | 5 |
| gene id | LOC117596444 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 740243 ~ 890302 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU472461 | lncRNA | downstream | 96234 | 642402 ~ 644009 (-) | True | G398338 |
| TU472424 | lncRNA | downstream | 144254 | 595118 ~ 595989 (-) | True | G398304 |
| XR_004577543.1 | lncRNA | downstream | 322924 | 414465 ~ 417319 (-) | True | LOC117596419 |
| TU472224 | lncRNA | downstream | 432834 | 307118 ~ 307409 (-) | True | G398158 |
| XR_004577548.1 | lncRNA | downstream | 434370 | 305073 ~ 305873 (-) | False | LOC117596423 |
| TU472495 | lncRNA | upstream | 4791 | 895071 ~ 950545 (-) | True | G398369 |
| TU472548 | lncRNA | upstream | 51977 | 942257 ~ 944486 (-) | True | G398413 |
| TU472490 | lncRNA | upstream | 59412 | 949692 ~ 996770 (-) | True | G398364 |
| TU472569 | lncRNA | upstream | 124663 | 1014943 ~ 1083831 (-) | False | G398433 |
| TU472575 | lncRNA | upstream | 135140 | 1025420 ~ 1102347 (-) | True | G398437 |
| XM_026939079.2 | mRNA | downstream | 6109 | 726950 ~ 734134 (-) | True | LOC113541895 |
| XM_034301706.1 | mRNA | downstream | 47856 | 677903 ~ 692387 (-) | True | sox10 |
| XM_034301707.1 | mRNA | downstream | 49948 | 677903 ~ 690295 (-) | False | sox10 |
| XM_034301708.1 | mRNA | downstream | 79180 | 652498 ~ 661063 (-) | True | LOC117595703 |
| XM_034301443.1 | mRNA | downstream | 94292 | 644048 ~ 645951 (-) | True | LOC113547081 |
| XM_034301676.1 | mRNA | upstream | 1640 | 891920 ~ 906375 (-) | True | fam234b |
| XM_026910201.2 | mRNA | upstream | 60922 | 951202 ~ 954200 (-) | True | fmc1 |
| XM_034301448.1 | mRNA | upstream | 218413 | 1108693 ~ 1111909 (-) | True | LOC117596399 |
| XM_026910221.2 | mRNA | upstream | 225354 | 1115634 ~ 1124106 (-) | False | LOC113524091 |
| XM_026910220.2 | mRNA | upstream | 225354 | 1115634 ~ 1124105 (-) | True | LOC113524091 |
| TU472265 | other | downstream | 258235 | 474566 ~ 482008 (-) | False | LOC117596396 |
| TU472228 | other | downstream | 414698 | 319734 ~ 325545 (-) | False | pick1 |
| trnar-ccu_18 | other | downstream | 429588 | 310583 ~ 310655 (-) | True | trnar-ccu_18 |
| TU472487 | other | upstream | 9248 | 899528 ~ 906361 (-) | False | fam234b |
| XR_004577594.1 | other | upstream | 17345 | 907625 ~ 907779 (-) | True | LOC117596481 |
| XR_004577595.1 | other | upstream | 19789 | 910069 ~ 910223 (-) | True | LOC117596482 |
| XR_003403678.1 | other | upstream | 23918 | 914198 ~ 914352 (-) | True | LOC113536357 |
| TU472541 | other | upstream | 28984 | 919264 ~ 920503 (-) | True | G398408 |
