RNA id: TU472486


Basic Information

Item Value
RNA id TU472486
length 2768
RNA type TUCP
GC content 0.43
exon number 4
gene id LOC117596444
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 740243 ~ 890302 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTAAAATGGCGTCTCCGCTGTGGTGTCGGTTTGCGAGACTGTCCCGGAATATCGGTGTGTTTCCGCGGACTGTGGTGTGTGAGAGCTCGGGAACAGTGCGGACACAGAGCCGGACTGCTGTCTGCACCTCCAGCGGCGCCATTCTGCCCAAACCCAAGAAGaCGGTGTTTGGGATGTTAAGGATCACTGTGGTCGTGATCCCCTTCTTGTACATCGGCACTCAGATCAGTAAAAACTTCGCTGCTCTGCTGGAGGAGCACGACATCTTCGTCCCTGAggatgatgacgatgacgattaaacacacacacaggtgtgtaagcctgCAGTACTGCAGTACAGTTCCAGGACGTCGGAGAACATTTCTGTGCTACCATGGCATGTCCGGTTCATCTCAAACActgtagtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttacagagctgtgtgtgtgtgtgtgtgtgtgtgtataatgtgaaCAGCTCCTCCTGATTGCATGCACtgtataaataacaataaaccaaaaataaactGGAGAAAACTCGACCCCTCTCtcgctgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatatggtgttgTGTGATGAAGCCTCGCTTCGTAGGGGTCAAAGGTGACGGCCATTGCTCCAGAGTCCaatctttatgctccctagcaaactGAAGCCTTTTCTCCTGATTAGTCTCACTAACAAGTGGTTTTTTTATGGCCACTGACTGTTCAGCAGTCTCAGGTCCGATCCTGTGAGTTCTCCTCACACTGtgagtgtggaaatgctcttactttcactattaaactcAGCcatgagttctcctgtcgatttcTTACGATTTGACTTCACCAAGCGTTGAACTGATCTCTGATCATGGTCTTTCAGGATCTTTTTCCAACCACATTTTTCCATGAAGCTGGTGTTTCACTACTATCCTTCCAGCTGTTAATAATGCATCAGACAGTTCTAAACCCAGTTCAGCAATCTGCTTAGTTGTTTTCATGTATCAGTTCAGGTTAAAAGAAATAtcacctgaaacacattaatcactgcagtaattatccaatcaacagctcttaagtatttgctgatttaaatccaaatggaTGAGTGACACCACTACAGTTTAGCATCTTACACATGAATAAATAGTGCTTTATGTACCACTCTGAGTTAACTGGTGCTccgtttatttatttctgatatGAACGTGTGAGACTGTACAGACTCCAGCTCTGATTTGTAACGCAACAGCGACTCCCAGTtcaaaaaaagtcttaaaaacacacaatgggCTCGAACAGCGCCATGTTCAacgaatttcctggttacacaactgcactatttgtccatgtagtacacagttatagaagggaatgatttataatcgcactatccgtgtcacccagatgaggatggttcccttttgagtctggttcctctcgatGTTTCtccctcatatcatctcagggagtttttcctcaccaccgtcacctctggcttctcattagggataaatttatacatttaaaatctatatatttctgtaaagctgctttgtgagactgtctattgttaaaagtgctagaCAAATTATATAAAGAGtcacagaactgtgcaaaagtctcacacattcatgcaaaaaaatgctgtaaagatgctttcaaaaataatgaaaaatatttccacATGAAAAATTTCTATAAAGAACCAAAAACAGCGCGACAATCCTTAAAATAATAAAGCGTCAGCAGTCTGAGGTGCAGTGCGTTCAGCTTTATAAGGAAACGAGGTTGTAGAATCTGctgcagttcttctggagactcgcAATCGCAGCCTTCGTTACggttttgtctgaaaagttacGCTCTGTTACGTAACATGACGTGACACACAAACgcttttctgtaatatttaatttttctgtaattttttacCGACTCGGTAACACAGGAGTCATGAAATAAACTCCGATAACGAAATTATGATAATAAGAAAAGACAGGGTGgctaaaacttttgcacagcgCTGTAAGATGAAGaacgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggaaagaGCCAGGACTCAGGTTGTGTTACTTTCTGCTCTGTAGTCTGTGACGTGTTCTAGAACGTTCCAGTCGTTACAACGTCTCGTTCTGGAGttctaaactctaaactctgCATTCTAGAACCCTGACATTCAGAACAAACTCCTCTCTGAtctctgatctcacacacacacacacacacacacacacacacacgcgcgcgcgcgcgagaaatcagacagacagacacggtgtgtgtgaggaacGCAGTGTATTTACAGTTCAGCATCAGAGAAGATCATGAGGTGAAAGGTCAGAGAGAGGTCAAGGGTTGTGTCCATCGTAAAACTTGGACAGGAAGTCGGTGGAGCGCGGCGTCTCCGTCTCGTGGAAGTAGCGCATGATGTGCGTCTTCTGTTTCCACACGTTGATGGTCTCCTGAAGCTCCATCTTACCCTGAAGAAGGAGacgttttatttgtatagcgcctTTCCACAAGCTCAGCAGATTTACATCAATACAGTACAATTAAAGATACTggaaatacatttcaaataaatacgTTTTAAGCTGAGATTTGAAAGCAGGTAGAGAGGAAATATTATGACGTGACAGGGGTAGTGAATTCCAGAGCTTCGGAGCGACAACACAAAAGGATCGGccaccaagagtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472497 lncRNA downstream 3810 879025 ~ 881892 (-) True G398371
TU472522 lncRNA downstream 34363 850450 ~ 851339 (-) True G398395
TU472521 lncRNA downstream 36949 847745 ~ 848753 (-) True G398394
TU472520 lncRNA downstream 38912 841936 ~ 846790 (-) True G398393
TU472461 lncRNA downstream 241693 642402 ~ 644009 (-) True G398338
TU472495 lncRNA upstream 4791 895071 ~ 950545 (-) True G398369
TU472548 lncRNA upstream 51977 942257 ~ 944486 (-) True G398413
TU472490 lncRNA upstream 59412 949692 ~ 996770 (-) True G398364
TU472569 lncRNA upstream 124663 1014943 ~ 1083831 (-) False G398433
TU472575 lncRNA upstream 135140 1025420 ~ 1102347 (-) True G398437
XM_026914683.2 mRNA downstream 46261 833892 ~ 839441 (-) False LOC113527139
XM_034301595.1 mRNA downstream 46261 833892 ~ 839441 (-) False LOC113527139
XM_026914681.2 mRNA downstream 46261 833892 ~ 839441 (-) False LOC113527139
XM_034301594.1 mRNA downstream 46261 833892 ~ 839441 (-) True LOC113527139
XM_034301596.1 mRNA downstream 47128 833892 ~ 838574 (-) False LOC113527139
XM_034301676.1 mRNA upstream 1640 891920 ~ 906375 (-) True fam234b
XM_026910201.2 mRNA upstream 60922 951202 ~ 954200 (-) True fmc1
XM_034301448.1 mRNA upstream 218413 1108693 ~ 1111909 (-) True LOC117596399
XM_026910221.2 mRNA upstream 225354 1115634 ~ 1124106 (-) False LOC113524091
XM_026910220.2 mRNA upstream 225354 1115634 ~ 1124105 (-) True LOC113524091
TU472265 other downstream 403694 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 560157 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 575047 310583 ~ 310655 (-) True trnar-ccu_18
TU472487 other upstream 9248 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 17345 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 19789 910069 ~ 910223 (-) True LOC117596482
XR_003403678.1 other upstream 23918 914198 ~ 914352 (-) True LOC113536357
TU472541 other upstream 28984 919264 ~ 920503 (-) True G398408

Expression Profile