RNA id: TU472495


Basic Information

Item Value
RNA id TU472495
length 549
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G398369
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 895071 ~ 950545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGAAtctaagatatttatttattattcaccaATATAATTTTCCAGCAGCTGCAAATCAGAGAAAGGAATCATGAACAACAaaggaaactgtgtgtgtgtgtgtgtgagtgtgtgagtaagagTCAATACACCATACTGTGATAATCGATTTTACTCACATCATAGTTTACAATATTATCACAAGATATTATGGGATTGCTTTTTCTGAGGAAAcgcgcacacacacacgcacacacacacacacacacacacacatttataaacactCACCTGTGTGATAGTGTACCTGTGACACAATGTAACTCTACTATAATTAAATAACCTTACActttcattatttctctctctctctgtctgtgtgtgtctctttctctctttctctctctctctctctctgtctctcttctctttctctctatgtgtgtgtgtctctctttctctttctctctctctctctgtctgtgtgtatgtgtctctctctctctctgtctgcgtgtatgtgtctctctctctctctgtctgcgtgtatgtgtctctctctctctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472497 lncRNA downstream 13179 879025 ~ 881892 (-) True G398371
TU472522 lncRNA downstream 43732 850450 ~ 851339 (-) True G398395
TU472521 lncRNA downstream 46318 847745 ~ 848753 (-) True G398394
TU472520 lncRNA downstream 48281 841936 ~ 846790 (-) True G398393
TU472461 lncRNA downstream 251062 642402 ~ 644009 (-) True G398338
TU472569 lncRNA upstream 64398 1014943 ~ 1083831 (-) False G398433
TU472575 lncRNA upstream 74875 1025420 ~ 1102347 (-) True G398437
TU472570 lncRNA upstream 75797 1026342 ~ 1083831 (-) False G398433
TU472587 lncRNA upstream 126283 1076828 ~ 1078028 (-) True G398446
TU472568 lncRNA upstream 132272 1082817 ~ 1083831 (-) True G398433
XM_034301679.1 mRNA downstream 4769 887935 ~ 890302 (-) False LOC117596444
XM_026914683.2 mRNA downstream 55630 833892 ~ 839441 (-) False LOC113527139
XM_034301595.1 mRNA downstream 55630 833892 ~ 839441 (-) False LOC113527139
XM_026914681.2 mRNA downstream 55630 833892 ~ 839441 (-) False LOC113527139
XM_034301594.1 mRNA downstream 55630 833892 ~ 839441 (-) True LOC113527139
XM_026910201.2 mRNA upstream 657 951202 ~ 954200 (-) True fmc1
XM_034301448.1 mRNA upstream 158148 1108693 ~ 1111909 (-) True LOC117596399
XM_026910221.2 mRNA upstream 165089 1115634 ~ 1124106 (-) False LOC113524091
XM_026910220.2 mRNA upstream 165089 1115634 ~ 1124105 (-) True LOC113524091
XM_034301450.1 mRNA upstream 222855 1173400 ~ 1176207 (-) True LOC117596401
TU472485 other downstream 4791 740243 ~ 890280 (-) False LOC117596444
TU472486 other downstream 4791 885702 ~ 890280 (-) True LOC117596444
TU472265 other downstream 413063 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 569526 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 584416 310583 ~ 310655 (-) True trnar-ccu_18
TU472483 other upstream 661 951206 ~ 953961 (-) False fmc1
TU472656 other upstream 326108 1276653 ~ 1281771 (-) False LOC117596427
TU472657 other upstream 326108 1276653 ~ 1317636 (-) False LOC117596427
XR_004577580.1 other upstream 510779 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other upstream 510809 1461354 ~ 1462070 (-) False LOC117596459

Expression Profile