RNA id: TU472522


Basic Information

Item Value
RNA id TU472522
length 836
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G398395
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 850450 ~ 851339 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatggaaacaaaatCTCATCaaaaagaaagataagaaaaattttaaaaagatcaAAAGAGGAGATTAAAAACATctgaaagaacagaaagaatgaaaaagtgaaaatgagatAACAGAAGGAGGTAAAGAGTGTGTTACTTTTTGGACAGGAGAGGATTTCCTGCTTTCCTGGGTAACGCTACTTTCTCCTCTTCATCACCCCTCtctccatcttcatcatcactcGCTCCTGCTGCCTGCTGCACCAGAAacacaccttcatcatcatcatcatcaccatcaccaccaataccttcatcatcaccatcaacttcaccatcatcatcaacttcaccatcatcaccaccatcaccttcatcagcatcatcaccaccaccttcatcatcaccaccatcaccttcatcaccaccatcaccttcatcatcaccaccatcatcaccaccatcaccttcatcatcatcatcaacttcatcatcaccaccatcatcaccaccatcaccttcatcatcatcatcaacttcatcatcaccaccatcatcatcatcaacttcatcatcaccaccatcatcaccaccatcaccttcatcatcatcatcaccatcatcaccatcaccaccttcatcatcatgtGACCCAGCAGGTggagaatacccataatgcactttactTCACTGGTCTAAATCCTCACATGATTATTGGTCAGAGACTCCAGCAGTCGTGTGCCGGAGAGGTCGAGGTCGCTGATGGTCGTCACGGTAACGGTGTGGTTGGGGTGATCGTATTGCACTGACTCTGTAGTCGaggtgatgacatcatcaagtTCATCTGCatcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472521 lncRNA downstream 1697 847745 ~ 848753 (-) True G398394
TU472520 lncRNA downstream 3660 841936 ~ 846790 (-) True G398393
TU472461 lncRNA downstream 206441 642402 ~ 644009 (-) True G398338
TU472424 lncRNA downstream 254461 595118 ~ 595989 (-) True G398304
XR_004577543.1 lncRNA downstream 433131 414465 ~ 417319 (-) True LOC117596419
TU472497 lncRNA upstream 27686 879025 ~ 881892 (-) True G398371
TU472530 lncRNA upstream 31850 883189 ~ 925071 (-) True G398403
TU472532 lncRNA upstream 31850 883189 ~ 941747 (-) False G398403
TU472495 lncRNA upstream 43732 895071 ~ 950545 (-) True G398369
TU472548 lncRNA upstream 90918 942257 ~ 944486 (-) True G398413
XM_026914683.2 mRNA downstream 11009 833892 ~ 839441 (-) False LOC113527139
XM_034301595.1 mRNA downstream 11009 833892 ~ 839441 (-) False LOC113527139
XM_026914681.2 mRNA downstream 11009 833892 ~ 839441 (-) False LOC113527139
XM_034301594.1 mRNA downstream 11009 833892 ~ 839441 (-) True LOC113527139
XM_034301596.1 mRNA downstream 11876 833892 ~ 838574 (-) False LOC113527139
XM_034301679.1 mRNA upstream 36596 887935 ~ 890302 (-) False LOC117596444
XM_034301676.1 mRNA upstream 40581 891920 ~ 906375 (-) True fam234b
XM_026910201.2 mRNA upstream 99863 951202 ~ 954200 (-) True fmc1
XM_034301448.1 mRNA upstream 257354 1108693 ~ 1111909 (-) True LOC117596399
XM_026910221.2 mRNA upstream 264295 1115634 ~ 1124106 (-) False LOC113524091
TU472265 other downstream 368442 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 524905 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 539795 310583 ~ 310655 (-) True trnar-ccu_18
TU472486 other upstream 34363 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 48189 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 56286 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 58730 910069 ~ 910223 (-) True LOC117596482
XR_003403678.1 other upstream 62859 914198 ~ 914352 (-) True LOC113536357

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049488 True 530 lncRNA 0.55 3 NC_007114.7 1150386 ~ 1154049 (+)