RNA id: TU472530


Basic Information

Item Value
RNA id TU472530
length 1516
lncRNA type read_through
GC content 0.48
exon number 3
gene id G398403
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 883189 ~ 941747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTATTATAAAGCGAGAGAATttactgcagaaaaaaacaaacaggaagtcCAGTACAGACACAGAATTGTACACACAGCCCCatcccatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaggggtcagggctgtgtcccaaatcaccaACACCAGCAAGGGTACACTACAAAGAGCTGAACACAGAGGATCGGGACAGGACCGCCCTCTGCGCAGAAACATCACTTCTAAACGAGTCTTTATACACAGCAtgtacatcatcatcatgatcctgtgtgtgtgtgtgtgtgtgtttttaaaacaaaataacagttCCTATGAGCCAGAATCACACACTGAACCTGCACccgtttcacacacacacttaccaggACGGCGTATGCGTATGAGGGTGATGGTACGTGTCCTTTTGCGAAGTTTGTAAACTGAGTCGTGGTCCTCTACGTGTGTATCTAATGAGGGTGGATATGGGCGTTGCTATGGAAACCAGGTAAACATTAACGAAACGTCTCtagaattattatttaacacaaaGCTAGTTATATGATCATGTGCATCAACCGCATGATAAGCTAATTTCAGCTAGCTTACCCTCACTAGCACACCATCTAGCTCAGTTAGGAAGAAATCTGAGACGCTTCATGTGAATTTAATATCGTAAAGACGCGATAGTTATTATTACAGAtaatactataaaaagcagGATCTACATCTTAAAGCTGATGGACACCGTTTCCCTTGATCTGATTGGCTAAACACAACGTGAGCCATCATACCATCAGAACCGTCcgattaaaaacaaacaggatgCAACACTCGCAAATGGACACGTACCGATACGAGAGTGTGTGATAGACCTGGATGCAGACGgctgtagagagtgtgtgtgtgtgtgtgtgtgtgtgttttagatctTGATGCGGAAGGCTGTAGAGTGTGCGGCAGGGGGAGGAGTCTCTGTAGAGGCCGAGCTCTGATTGGACGATTTAAAAAGAGCCTTCAGGATGGTCTGAGGATCCACTTCAGCCGAGCTGGAGCGAGGTGTGGATCGGGACACGGCCGAGGAGGGAGTCTCTTTCTTACCGGGAGAGTCACTCAGTCTcctagaaagagagagagaatagaaagagagagagagagagagagatagagagagagagagagagagagagagaaagaacatggTCAGATGTTGTGTTTAAGCTGCAGCAGTTTAACTGGTTTTCATTATAAACGCTAAGCGCTGTACCCTGTGGCTAGCAGAGGCGCTAACACCGTTAGCTTAGCGTAGCTGAGACTCGACCTTGACCCGGTGTGTGTGATAATGAATGTGAGCGCTAAATGTTCCGGATGTTACCGGTATTCGGTACCTCCCGGTACCAGGCCCGGTACAGCTCCCTCACACGCCGCTTGGCCTCGTCCACATCGCGGCTGAGGATCGGCTTCACCGCCCGCGCAGCTCCGGCGACCCGGGTAGCAGCCGAGGACGCCATGTTTACACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472497 lncRNA downstream 1297 879025 ~ 881892 (-) True G398371
TU472522 lncRNA downstream 31850 850450 ~ 851339 (-) True G398395
TU472521 lncRNA downstream 34436 847745 ~ 848753 (-) True G398394
TU472520 lncRNA downstream 36399 841936 ~ 846790 (-) True G398393
TU472461 lncRNA downstream 239180 642402 ~ 644009 (-) True G398338
TU472548 lncRNA upstream 17186 942257 ~ 944486 (-) True G398413
TU472490 lncRNA upstream 24621 949692 ~ 996770 (-) True G398364
TU472569 lncRNA upstream 89872 1014943 ~ 1083831 (-) False G398433
TU472575 lncRNA upstream 100349 1025420 ~ 1102347 (-) True G398437
TU472570 lncRNA upstream 101271 1026342 ~ 1083831 (-) False G398433
XM_026914683.2 mRNA downstream 43748 833892 ~ 839441 (-) False LOC113527139
XM_034301595.1 mRNA downstream 43748 833892 ~ 839441 (-) False LOC113527139
XM_026914681.2 mRNA downstream 43748 833892 ~ 839441 (-) False LOC113527139
XM_034301594.1 mRNA downstream 43748 833892 ~ 839441 (-) True LOC113527139
XM_034301596.1 mRNA downstream 44615 833892 ~ 838574 (-) False LOC113527139
XM_026910201.2 mRNA upstream 26131 951202 ~ 954200 (-) True fmc1
XM_034301448.1 mRNA upstream 183622 1108693 ~ 1111909 (-) True LOC117596399
XM_026910221.2 mRNA upstream 190563 1115634 ~ 1124106 (-) False LOC113524091
XM_026910220.2 mRNA upstream 190563 1115634 ~ 1124105 (-) True LOC113524091
XM_034301450.1 mRNA upstream 248329 1173400 ~ 1176207 (-) True LOC117596401
TU472265 other downstream 401181 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 557644 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 572534 310583 ~ 310655 (-) True trnar-ccu_18
TU472483 other upstream 26135 951206 ~ 953961 (-) False fmc1
TU472656 other upstream 351582 1276653 ~ 1281771 (-) False LOC117596427
TU472657 other upstream 351582 1276653 ~ 1317636 (-) False LOC117596427
XR_004577580.1 other upstream 536253 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other upstream 536283 1461354 ~ 1462070 (-) False LOC117596459

Expression Profile