Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU472570 |
| length | 876 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | G398433 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 1014943 ~ 1083831 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU472490 | lncRNA | downstream | 29572 | 949692 ~ 996770 (-) | True | G398364 |
| TU472495 | lncRNA | downstream | 75797 | 895071 ~ 950545 (-) | True | G398369 |
| TU472548 | lncRNA | downstream | 81856 | 942257 ~ 944486 (-) | True | G398413 |
| TU472532 | lncRNA | downstream | 84595 | 883189 ~ 941747 (-) | False | G398403 |
| TU472530 | lncRNA | downstream | 101271 | 883189 ~ 925071 (-) | True | G398403 |
| TU472600 | lncRNA | upstream | 52806 | 1136637 ~ 1139668 (-) | True | G398459 |
| XR_004577541.1 | lncRNA | upstream | 104722 | 1188553 ~ 1191451 (-) | False | LOC117596417 |
| XR_004577540.1 | lncRNA | upstream | 104722 | 1188553 ~ 1191446 (-) | False | LOC117596417 |
| XR_004577539.1 | lncRNA | upstream | 104722 | 1188553 ~ 1190249 (-) | True | LOC117596417 |
| TU472659 | lncRNA | upstream | 168212 | 1252043 ~ 1326018 (-) | True | G398509 |
| XM_026910201.2 | mRNA | downstream | 72142 | 951202 ~ 954200 (-) | True | fmc1 |
| XM_034301676.1 | mRNA | downstream | 119967 | 891920 ~ 906375 (-) | True | fam234b |
| XM_034301679.1 | mRNA | downstream | 136040 | 887935 ~ 890302 (-) | False | LOC117596444 |
| XM_034301594.1 | mRNA | downstream | 186901 | 833892 ~ 839441 (-) | True | LOC113527139 |
| XM_034301448.1 | mRNA | upstream | 24862 | 1108693 ~ 1111909 (-) | True | LOC117596399 |
| XM_026910221.2 | mRNA | upstream | 31803 | 1115634 ~ 1124106 (-) | False | LOC113524091 |
| XM_026910220.2 | mRNA | upstream | 31803 | 1115634 ~ 1124105 (-) | True | LOC113524091 |
| XM_034301450.1 | mRNA | upstream | 89569 | 1173400 ~ 1176207 (-) | True | LOC117596401 |
| XM_026910219.2 | mRNA | upstream | 158956 | 1242787 ~ 1250542 (-) | True | LOC113524089 |
| TU472483 | other | downstream | 72381 | 951206 ~ 953961 (-) | False | fmc1 |
| TU472541 | other | downstream | 105839 | 919264 ~ 920503 (-) | True | G398408 |
| XR_003403678.1 | other | downstream | 111990 | 914198 ~ 914352 (-) | True | LOC113536357 |
| XR_004577595.1 | other | downstream | 116119 | 910069 ~ 910223 (-) | True | LOC117596482 |
| XR_004577594.1 | other | downstream | 118563 | 907625 ~ 907779 (-) | True | LOC117596481 |
| TU472656 | other | upstream | 192822 | 1276653 ~ 1281771 (-) | False | LOC117596427 |
| TU472657 | other | upstream | 192822 | 1276653 ~ 1317636 (-) | False | LOC117596427 |
| XR_004577580.1 | other | upstream | 377493 | 1461324 ~ 1462070 (-) | False | LOC117596459 |
| XR_004577579.1 | other | upstream | 377523 | 1461354 ~ 1462070 (-) | False | LOC117596459 |
| TU472900 | other | upstream | 485172 | 1569003 ~ 1591729 (-) | False | st13 |
